ExperimentSet4DNESONDPZV6
released
December 4th, 2023 at 7:52pm
Source Publication
Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression.
Murphy D, Salataj E, et al., bioRxiv : the preprint server for biology 2023
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
in vitro differentiated cells
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Target: H3K27ac (mouse)
7 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEX61I9YS9
Bio Rep 1, Tec Rep 1
HiChIP against H3K27ac (mouse) on KH2 ESC differentiated to stem cellExperiment
4DNEXSLKVIJY
Bio Rep 2, Tec Rep 1
HiChIP against H3K27ac (mouse) on KH2 ESC differentiated to stem cellExperiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX61I9YS9
Bio Rep 1, Tec Rep 1
HiChIP against H3K27ac (mouse) on KH2 ESC differentiated to stem cellExperiment
4DNEXSLKVIJY
Bio Rep 2, Tec Rep 1
HiChIP against H3K27ac (mouse) on KH2 ESC differentiated to stem cell