ExperimentSetReplicate

ExperimentSet4DNESJAG21WG
released

HiChIP on extra embryonic stem cells (XEN) from mouse

   December 4th, 2023 at 7:52pm

Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K27ac (mouse)

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESJAG21WG
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIU3PV1V7
272.3m
57.339%
30.104%
12.557%
Experiment
4DNEXQIO4DI2
Bio Rep 1, Tec Rep 1
HiChIP against H3K27ac (mouse) on extraembryonic cell
File
Contact List-replicate (pairs)
4DNFITZSH3IT
115.65m
57.825%
29.648%
12.527%
Experiment
4DNEXTOZI3II
Bio Rep 2, Tec Rep 1
HiChIP against H3K27ac (mouse) on extraembryonic cell
File
Contact List-replicate (pairs)
4DNFICZLZB84
156.65m
56.98%
30.442%
12.578%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESJAG21WG
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIR8VTJ69
1000; 2000; 5000; 10000; 25000; 50000; 100000; 250000; 500000; 1000000; 2500000; 5000000; 10000000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQIO4DI2
Bio Rep 1, Tec Rep 1
HiChIP against H3K27ac (mouse) on extraembryonic cell
File
Alignments (bam)
4DNFIMWNX9Z2
294.58m
5.751%
9.04%
27.901%
18.049%
0.06%
Experiment
4DNEXTOZI3II
Bio Rep 2, Tec Rep 1
HiChIP against H3K27ac (mouse) on extraembryonic cell
File
Alignments (bam)
4DNFIOQVOI31
428.36m
5.471%
8.7%
32.783%
16.475%
0.055%