403 fewer sets in 4DN-only Data.
Included Properties
Data Type
Project
Lab
Experiment Category
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
Set Type
Status
Commendations
Warnings
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
multicellular organism
Multiplexed FISH in C. elegans
ChrV - right arm, Wild type
Target
3 TADs on ChrV (right-arm) (roundworm)
multiplexed FISH
multicellular organism
Multiplexed FISH in C. elegans
ChrV - left arm, Wild type
Target
6 TADs on ChrV (left-arm) (roundworm)
multiplexed FISH
multicellular organism
Multiplexed FISH in C. elegans
ChrV - central region, Wild type
Target
3 TADs on ChrV (central region) (roundworm)
multiplexed FISH
multicellular organism
Multiplexed FISH in C. elegans
ChrV - Cec4 mutant
Target
22 TADs on ChrV (roundworm)
multiplexed FISH
multicellular organism
Multiplexed FISH in C. elegans
ChrV - Wild type
Target
22 TADs on ChrV (roundworm)
multiplexed FISH
multicellular organism
Multiplexed FISH in C. elegans
ChrI - Cec4 mutant
Target
14 TADs on ChrI (roundworm)
multiplexed FISH
multicellular organism
Multiplexed FISH in C. elegans
ChrI - Wild type
Target
14 TADs on ChrI (roundworm)
multiplexed FISH
H1-hESC differentiated to neural progenitor cell
Multiplexed FISH in neural crest cells on Chr22
sgNon-Targeting Control (for shCHD7)
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
H1-hESC differentiated to neural progenitor cell
Multiplexed FISH in neural crest cells on Chr22
shCHD7 targeted knocked-down
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
RPE-hTERT (Tier 2)
Multiplexed FISH in RPE1 on Chr21
sgNon-Targeting Control (for siCHD7)
Target
34 TADs in Chr21, Chromosomes, Geminin
multiplexed FISH
RPE-hTERT (Tier 2)
Multiplexed FISH in RPE1 on Chr21
siCHD7 targeted knocked-down
Target
34 TADs in Chr21, Chromosomes, Geminin
multiplexed FISH
RPE-hTERT (Tier 2)
Multiplexed FISH in RPE1 on Chr22
sgNon-Targeting Control (for siCHD7)
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
RPE-hTERT (Tier 2)
Multiplexed FISH in RPE1 on Chr22
siCHD7 targeted knocked-down
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
A549
Multiplexed FISH in A549-Cas9 on Chr22
GFP over-expression, Control (for CHD7 OE)
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
A549
Multiplexed FISH in A549-Cas9 on Chr22
CHD7 over-expression
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
A549
Multiplexed FISH in A549-Cas9 on Chr22
sgNon-Targeting Control (for siCHD7)
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
A549
Multiplexed FISH in A549-Cas9 on Chr22
siCHD7 targeted knocked-down
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
A549
Multiplexed FISH in A549-Cas9 on Chr22
sgNon-Targeting Control (for sgZNF114)
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
A549
Multiplexed FISH in A549-Cas9 on Chr22
sgZNF114 targeted knockdown
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
A549
Multiplexed FISH in A549-Cas9 on Chr22
sgNon-Targeting Control (for sgPCBP1)
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
A549
Multiplexed FISH in A549-Cas9 on Chr22
sgPCBP1 targeted knockdown
Target
27 TADs in Chr22, Chromosomes, Geminin
multiplexed FISH
A549
Multiplexed FISH in A549-Cas9 on Chr22
137 genes knocked-down (using 404 sgRNAs and 8 sgNTC)
Target
27 TADs in Chr22, Chromosomes, Geminin
RNA-seq
mature cerebellar granule neuron - PND11
RNA-seq on mouse cerebellar granule neurons - developmental series
PND11 - mature neurons
-
RNA-seq
immature cerebellar granule neuron - PND11
RNA-seq on mouse cerebellar granule neurons - developmental series
PND11 - immature neurons
-
RNA-seq
immature cerebellar granule neuron - PND6
RNA-seq on mouse cerebellar granule neurons - developmental series
PND6 - immature neuons
-