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403 fewer sets in 4DN-only Data.

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  • ExperimentSetReplicate2831
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    Lab
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  • Replicate2831
    • Status
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    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESMSZ4F9I
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in C. elegans
    ChrV - right arm, Wild type
    Target
    3 TADs on ChrV (right-arm) (roundworm)
    Ahilya Sawh Lab
    4DNESO3ZY323
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in C. elegans
    ChrV - left arm, Wild type
    Target
    6 TADs on ChrV (left-arm) (roundworm)
    Ahilya Sawh Lab
    4DNESCSUHS2E
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in C. elegans
    ChrV - central region, Wild type
    Target
    3 TADs on ChrV (central region) (roundworm)
    Ahilya Sawh Lab
    4DNES6N36I1G
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in C. elegans
    ChrV - Cec4 mutant
    Target
    22 TADs on ChrV (roundworm)
    Ahilya Sawh Lab
    4DNES4LQ2W7R
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in C. elegans
    ChrV - Wild type
    Target
    22 TADs on ChrV (roundworm)
    Ahilya Sawh Lab
    4DNESZK1WOO7
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in C. elegans
    ChrI - Cec4 mutant
    Target
    14 TADs on ChrI (roundworm)
    Ahilya Sawh Lab
    4DNESO52B8EA
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in C. elegans
    ChrI - Wild type
    Target
    14 TADs on ChrI (roundworm)
    Ahilya Sawh Lab
    4DNESB7SZY5Q
    multiplexed FISH
    H1-hESC differentiated to neural progenitor cell
    Multiplexed FISH in neural crest cells on Chr22
    sgNon-Targeting Control (for shCHD7)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESHA7AS6L
    multiplexed FISH
    H1-hESC differentiated to neural progenitor cell
    Multiplexed FISH in neural crest cells on Chr22
    shCHD7 targeted knocked-down
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESIUBFH6Q
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr21
    sgNon-Targeting Control (for siCHD7)
    Target
    34 TADs in Chr21, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES94LRC75
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr21
    siCHD7 targeted knocked-down
    Target
    34 TADs in Chr21, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES6W6XBUJ
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr22
    sgNon-Targeting Control (for siCHD7)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESNGLW3S2
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr22
    siCHD7 targeted knocked-down
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES6SPZBS6
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    GFP over-expression, Control (for CHD7 OE)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES5UHPM9B
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    CHD7 over-expression
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESDOIAUSY
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgNon-Targeting Control (for siCHD7)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES1S6LQKZ
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    siCHD7 targeted knocked-down
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESNWDMERJ
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgNon-Targeting Control (for sgZNF114)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES6RGJOMK
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgZNF114 targeted knockdown
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESYSJOREU
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgNon-Targeting Control (for sgPCBP1)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESTEL2MX4
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgPCBP1 targeted knockdown
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES7J5VP92
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    137 genes knocked-down (using 404 sgRNAs and 8 sgNTC)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESRYMCY6W
    RNA-seq
    mature cerebellar granule neuron - PND11
    RNA-seq on mouse cerebellar granule neurons - developmental series
    PND11 - mature neurons
    -
    Tomoko Yamada, NW
    4DNESL5SGC7F
    RNA-seq
    immature cerebellar granule neuron - PND11
    RNA-seq on mouse cerebellar granule neurons - developmental series
    PND11 - immature neurons
    -
    Tomoko Yamada, NW
    4DNESNHX1MVX
    RNA-seq
    immature cerebellar granule neuron - PND6
    RNA-seq on mouse cerebellar granule neurons - developmental series
    PND6 - immature neuons
    -
    Tomoko Yamada, NW