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Included Properties

Data Type
  • ExperimentSetReplicate26
    • Dataset
  • nascent transcript RNA FISH - JQ1 treatment26
    • Assay Details
    Set Type
  • Replicate26
    • Status
  • Released26
    • Warnings
    16 Common Properties
     Project
    4DN
     Lab
    Arjun Raj, UPENN
     Experiment Category
    Microscopy
     Experiment Type
    FISH
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Unclassified
     Sample Category
    Mouse stem cell
     Sample
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
     Organ/System
    No value
     Tissue Source
    stem cell
     Publication
    Bartman CR et al. (2018) PMID:30554946
     Modifications
    No value
     Treatments
    Chemical
     Center
    NT - Raj
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESQOT94IR
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hnrnpl probe, +JQ1
    Target
    Chromosomes, GRCm38:7:28808541-28822266 mouse region
    Arjun Raj, UPENN
    4DNES4QTKJ16
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hnrnpl probe, control
    Target
    Chromosomes, GRCm38:7:28808541-28822266 mouse region
    Arjun Raj, UPENN
    4DNESPE5LZ1C
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    cdc34, slc4a1 probes, +JQ1
    Target
    Chromosomes, GRCm38:10:79682195-79688398 mouse region, GRCm38:11:102348820-102365281 mouse region
    Arjun Raj, UPENN
    4DNESE8JB6XE
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    cdc34, slc4a1 probes, control
    Target
    Chromosomes, GRCm38:10:79682195-79688398 mouse region, GRCm38:11:102348820-102365281 mouse region
    Arjun Raj, UPENN
    4DNES2X7ULBN
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hbb-b1 probe, +JQ1
    Target
    Chromosomes, GRCm38:7:103826534-103827928 mouse region
    Arjun Raj, UPENN
    4DNESUPMDA2K
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hbb-b1 probe, control
    Target
    Chromosomes, GRCm38:7:103826534-103827928 mouse region
    Arjun Raj, UPENN
    4DNESS4DX5FS
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    slc25a37 probe, +JQ1
    Target
    Chromosomes, GRCm38:14:69241851-69285103 mouse region
    Arjun Raj, UPENN
    4DNESGLLM8PO
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    slc25a37 probe, control
    Target
    Chromosomes, GRCm38:14:69241851-69285103 mouse region
    Arjun Raj, UPENN
    4DNESK5CRXKT
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    zfpm1, pabpc1 probes, +JQ1
    Target
    Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:15:36595658-36608973 mouse region
    Arjun Raj, UPENN
    4DNESYBZL1ZA
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    zfpm1, pabpc1 probes, control
    Target
    Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:15:36595658-36608973 mouse region
    Arjun Raj, UPENN
    4DNESZ47P2LZ
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    prdx2 probe, +JQ1
    Target
    Chromosomes, GRCm38:8:84969622-84974811 mouse region
    Arjun Raj, UPENN
    4DNESSSYH5E2
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    prdx2 probe, control
    Target
    Chromosomes, GRCm38:8:84969622-84974811 mouse region
    Arjun Raj, UPENN
    4DNES7EV2JRX
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hba-a1, klf1 probes, +JQ1
    Target
    Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84901928-84905295 mouse region
    Arjun Raj, UPENN
    4DNESK2LCLFB
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hba-a1, klf1 probes, control
    Target
    Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84901928-84905295 mouse region
    Arjun Raj, UPENN
    4DNES3W24U6W
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hba-a1, prdx2, klf1 probes, +JQ1
    Target
    Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84969622-84974811 mouse region, GRCm38:8:84901928-84905295 mouse region
    Arjun Raj, UPENN
    4DNESGXQ19WQ
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hba-a1, prdx2, klf1 probes, control
    Target
    Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84969622-84974811 mouse region, GRCm38:8:84901928-84905295 mouse region
    Arjun Raj, UPENN
    4DNES5JPYJ1N
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hba-a1, prdx2 probes, +JQ1
    Target
    Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84969622-84974811 mouse region
    Arjun Raj, UPENN
    4DNESBCJHUSZ
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    hba-a1, prdx2 probes, control
    Target
    Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84969622-84974811 mouse region
    Arjun Raj, UPENN
    4DNESGOOHUGJ
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    zfpm1, slc25a37 probes, +JQ1
    Target
    Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:14:69241851-69285103 mouse region
    Arjun Raj, UPENN
    4DNESWQO1AL4
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    zfpm1, slc25a37 probes, control
    Target
    Chromosomes, GRCm38:8:122282141-122337247 mouse region, GRCm38:14:69241851-69285103 mouse region
    Arjun Raj, UPENN
    4DNESTFG5SDC
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    klf1 probe, +JQ1
    Target
    Chromosomes, GRCm38:8:84901928-84905295 mouse region
    Arjun Raj, UPENN
    4DNESFXI4YBA
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    klf1 probe, control
    Target
    Chromosomes, GRCm38:8:84901928-84905295 mouse region
    Arjun Raj, UPENN
    4DNESO6TT6QX
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    pabpc1 probe, +JQ1
    Target
    Chromosomes, GRCm38:15:36595658-36608973 mouse region
    Arjun Raj, UPENN
    4DNESCFE7UQQ
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    pabpc1 probe, control
    Target
    Chromosomes, GRCm38:15:36595658-36608973 mouse region
    Arjun Raj, UPENN
    4DNESPM6PKEH
    RNA FISH
    G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
    nascent transcript RNA FISH - JQ1 treatment
    tcf3, tal1 probes, +JQ1
    Target
    Chromosomes, GRCm38:10:80409165-80433653 mouse region, GRCm38:4:115056426-115071755 mouse region
    Arjun Raj, UPENN