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18 fewer sets in 4DN-only Data.

Included Properties

Dataset
Organ/System
Treatments
Set Type
Warnings
16 Common Properties
 Project
External
 Lab
Job Dekker, UMMS
 Experiment Category
Sequencing
 Experiment Type
Hi-C
 Organism
Chicken
 Sample Type
immortalized cells
 Sample Tier
Unclassified
 Sample Category
Other
 Sample
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
 Tissue Source
bursa of Fabricius
 Publication
Gibcus JH et al. (2018) PMID:29348367
 Modifications
No value
 Assay Details
Enzyme: HindIII
 Center
External
 Status
Released
 Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sorted sync. chicken cells
prometaphase block (60m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sorted sync. chicken cells
prometaphase block (30m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sorted sync. chicken cells
prometaphase (15m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sorted sync. chicken cells
G2 block (0m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells (no 1NM-PP1 washout)
prophase (10m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells (no 1NM-PP1 washout)
prophase (7.5m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells (no 1NM-PP1 washout)
G2 (5m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells (no 1NM-PP1 washout)
G2 (2.5m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells (no 1NM-PP1 washout)
G2 (0m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells
prometaphase (15m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells
prophase (5m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells
prometaphase block (60m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells
prometaphase block (30m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells
prometaphase (30m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells
prophase (10m)
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells
G2 block
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells
G2 block, elutriated
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. chicken cells
unsorted, unsynchronized
Enzyme
HindIII
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