ExperimentSetReplicate

ExperimentSet4DNEST1YQMVS
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dilution Hi-C on DT40 cells in prometaphase (30m post G2-block, nocodazole treated)

   October 30th, 2018 at 2:37pm
Source Publication
A pathway for mitotic chromosome formation.
Gibcus JH, Samejima K, et al., Science (New York, N.Y.) 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
G. gallus
Sample Type 
immortalized cells
Sample 
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNEST1YQMVS
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIR877LOH
158.8m
53.573%
29.6%
16.827%
Experiment
4DNEXYC9JO8X
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Contact List-replicate (pairs)
4DNFIEQYG26N
49.79m
70.03%
22.06%
7.91%
Experiment
4DNEXBI96SA6
Bio Rep 2, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Contact List-replicate (pairs)
4DNFIV1YBR1X
109.01m
46.056%
33.044%
20.9%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNEST1YQMVS
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIA7D7432
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXYC9JO8X
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Alignments (bam)
4DNFIN8GZ9Z6
132.82m
20.995%
9.424%
32.089%
0.004%
0.226%
Experiment
4DNEXBI96SA6
Bio Rep 2, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Alignments (bam)
4DNFIHXE44AX
169.31m
13.128%
7.725%
10.221%
4.544%
0.521%