ExperimentSetReplicate

ExperimentSet4DNESS8PTK6F
released

dilution Hi-C on DT40 cells in prometaphase (30m post G2-block)

   October 30th, 2018 at 2:37pm
Source Publication
A pathway for mitotic chromosome formation.
Gibcus JH, Samejima K, et al., Science (New York, N.Y.) 2018

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESS8PTK6F
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIF1GFXCY
49.62m
69.184%
22.901%
7.915%
File
Contact List-replicate (pairs)
4DNFIYH5QV8N
49.62m
69.184%
22.901%
7.915%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESS8PTK6F
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI165SFJU
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIKNPZDGB
105.43m
20.02%
9.472%
23.445%
0.004%
0.267%