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385 fewer sets in 4DN-only Data.

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Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
primary motor cortex
Chromatin tracing in mouse primary motor cortex
Mouse primary motor cortex - mecp2 KO
Target
2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse), Mecp2 mouse protein
multiplexed FISH
primary motor cortex
Chromatin tracing in mouse primary motor cortex
Mouse primary motor cortex - Wild type
Target
2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse)
TSA-seq
K562 (Tier 2)
TSA-seq v2 Lamin B1 in k562
condition2 - conditionAI - anti-Lamin B1
Target
LMNB1 protein
TSA-seq
K562 (Tier 2)
TSA-seq v2 Lamin B1 in k562
input - condition2 - conditionAI - anti-Lamin B1
Target
LMNB1 protein
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chrX (Xi) in human IMR90 cells
Target
20 TADs on ChrX #1-20, 20 TADs on ChrX #21-40, 40 TADs on ChrX #1-40
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chrX (Xa) in human IMR90 cells
Target
20 TADs on ChrX #1-20, 20 TADs on ChrX #21-40, 40 TADs on ChrX #1-40
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chr22 in human IMR90 cells
Target
14 TADs on Chr22 #1-14, 13 TADs on Chr22 #15-27, 27 TADs on Chr22 #1-27
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chr21 in human IMR90 cells
Target
17 TADs on Chr21 #1-17, 17 TADs on Chr21 #18-34, 34 TADs on Chr21 #1-34
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chr20 in human IMR90 cells
Target
15 TADs on Chr20 #1-15, 15 TADs on Chr20 #15-30, 30 TADs on Chr20 #1-30
multiplexed FISH
IMR-90
Chromatin tracing of chrX in IMR90
IMR90 mTeSR1
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
IMR-90
Chromatin tracing of chrX in IMR90
IMR90 5iLAF
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
IMR-90
Chromatin tracing of chrX in IMR90
IMR90 5iLA
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
HES-3
Chromatin tracing of chrX in HES3
HES3 mTeSR1
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
HES-3
Chromatin tracing of chrX in HES3
HES3 5iLAF
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
HES-3
Chromatin tracing of chrX in HES3
HES3 5iLA
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
HES-3
Chromatin tracing of chrX in HES3
HES3 4iLAF+tMEKi
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
H9
Chromatin tracing of chrX in H9
H9 mTeSR1
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
H9
Chromatin tracing of chrX in H9
H9 combined conditions, XIST positive chromosome
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
multiplexed FISH
H9
Chromatin tracing of chrX in H9
H9 combined conditions, XIST negative chromosome
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
multiplexed FISH
H9
Chromatin tracing of chrX in H9
H9 5iLAF
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
H9
Chromatin tracing of chrX in H9
H9 5iLA
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
H9
Chromatin tracing of chrX in H9
H9 5iLA ATRX, positive chromosomes
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40), ATRX
multiplexed FISH
H9
Chromatin tracing of chrX in H9
H9 5iLA ATRX, negative chromosomes
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40), ATRX
multiplexed FISH
H9
Chromatin tracing of chrX in H9
H9 4iLAF+tMEKi
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
H7-hESC
Chromatin tracing of chrX in H7
H7 day6 XIST positive chromosomes
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript