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Data Type
  • ExperimentSetReplicate129
    • Project
    Lab
    Experiment Type
  • FISH
  • multiplexed FISH129
    • Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Publication
    Modifications
    Treatments
    Assay Details
    Center
    Status
  • Released129
    • Warnings
    3 Common Properties
     Experiment Category
    Microscopy
     Set Type
    Replicate
     Commendations
    No value
    129 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESJ15KEBD
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    Knock-out of Kat6b
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESQD7KQVS
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESTLJOO1C
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 treated with dtag
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESE2MH977
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 + 6hr recovery (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES2LZ7D8W
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESG53SEUU
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF in 24hr differentiation media (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESX8IACI3
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESKBC3QBS
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485 + 6hr recovery
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES9946GB9
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES3QUSY1F
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag in 24hr differentiation media
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESI7RG1SM
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESO41DW4D
    multiplexed FISH
    IMR-90
    Genome-scale imaging in IMR90 cells
    DNA-MERFISH of 1041 genomic loci (alpha-amanitin treated)
    Target
    Chromosomes, region
    Xiaowei Zhuang, HARVARD
    4DNES5C3XVFP
    multiplexed FISH
    IMR-90
    Genome-scale imaging in IMR90 cells
    DNA-MERFISH + RNA-MERFISH of 1137 genes
    Target
    Chromosomes, transcript, region
    Xiaowei Zhuang, HARVARD
    4DNES5S9ND9I
    multiplexed FISH
    IMR-90
    Genome-scale imaging in IMR90 cells
    DNA-MERFISH of 1041 genomic loci
    Target
    Chromosomes, region
    Xiaowei Zhuang, HARVARD
    4DNESWTEQEBQ
    multiplexed FISH
    R1 mESC line
    Multiplexed FISH in R1 mESCs
    Non-Targeting control
    Target
    40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
    Alistair Boettiger, STANFORD
    4DNESSKEUB9C
    multiplexed FISH
    R1 mESC line
    Multiplexed FISH in R1 mESCs
    7.5-kb USP Prdm8
    Target
    40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
    Alistair Boettiger, STANFORD
    4DNESPB3DGGV
    multiplexed FISH
    R1 mESC line
    Multiplexed FISH in R1 mESCs
    33-kb USF Fgf5
    Target
    40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
    Alistair Boettiger, STANFORD
    4DNESAF7ROIW
    multiplexed FISH
    whole fruit fly
    Multiplexed FISH in Drosophila embryos
    Nuclear cycle 14 (nc14) of developmental stage
    Target
    34 oligos in dpp locus (fruit fly), Chromosomes
    Nollmann Marcelo
    4DNESJ2DKV9F
    multiplexed FISH
    whole fruit fly
    Multiplexed FISH in Drosophila embryos
    Nuclear cycle 12 (nc12) of developmental stage
    Target
    34 oligos in dpp locus (fruit fly), Chromosomes
    Nollmann Marcelo
    4DNESQU9R2NY
    multiplexed FISH
    visual cortex
    Chromatin tracing in mouse visual cortex
    Mouse visual cortex - mecp2 KO
    Target
    2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse), Mecp2 mouse protein
    Xiaowei Zhuang, HARVARD
    4DNESTTO3H2N
    multiplexed FISH
    double-positive, alpha-beta thymocyte
    Multiplexed FISH DP T-cells mice
    WT DP T-cells
    Target
    Ets1 mouse gene
    Golnaz Vahedi, UPENN
    4DNES44GBU46
    multiplexed FISH
    ES-E14TG2a
    Multiplexed FISH in mouse ESC-E14
    ORCA + RNA-FISH for 44 SEs 15-kb resolution
    Target
    374 genomic regions, 21 transcripts
    Alistair Boettiger, STANFORD
    4DNESABI2R6T
    multiplexed FISH
    ES-E14TG2a
    Multiplexed FISH in mouse ESC-E14
    ORCA for 376 SEs 15-kb resolution
    Target
    374 genomic regions
    Alistair Boettiger, STANFORD
    4DNESPE924IP
    multiplexed FISH
    primary motor cortex
    Chromatin tracing in mouse primary motor cortex
    Mouse primary motor cortex - mecp2 KO
    Target
    2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse), Mecp2 mouse protein
    Xiaowei Zhuang, HARVARD
    4DNESMTNNB3N
    multiplexed FISH
    primary motor cortex
    Chromatin tracing in mouse primary motor cortex
    Mouse primary motor cortex - Wild type
    Target
    2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse)
    Xiaowei Zhuang, HARVARD