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3 Common Properties
 Experiment Category
Microscopy
 Set Type
Replicate
 Commendations
No value
18 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, untreated, open chromatin region
Target
28 consecutive 30-kb loci on chrX (open chromatin), XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, untreated, closed chromatin region
Target
28 consecutive 30-kb loci on chrX (closed chromatin), XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, DNA methylation inhibitor
Target
28 consecutive 30-kb loci on chrX, XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, EZH2 methyltransferase inhibitor
Target
28 consecutive 30-kb loci on chrX, XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, hyper histone methylation
Target
28 consecutive 30-kb loci on chrX, XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, transcription inhibitor
Target
28 consecutive 30-kb loci on chrX, XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, HDAC inhibitors
Target
28 consecutive 30-kb loci on chrX, XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, untreated
Target
28 consecutive 30-kb loci on chrX, XIST transcript
multiplexed FISH
RPE-hTERT (Tier 2)
Chromatin tracing of chrX
RPE-1 cells, untreated
Target
28 consecutive 30-kb loci on chrX, mH2A.1
multiplexed FISH
cerebral cortex
Chromatin tracing in mouse brain
Mouse cerebral cortex
Target
2460 loci (mouse), 1200 loci from 20 regions at 25-kb resolution (mouse), 78 RNAs (mouse), H3K27me2 (mouse), H4K20me3 (mouse), Sf3a2 mouse protein, H3K27me3 (mouse), H3K4me2 (mouse), H3K9me3 (mouse), Mecp2 mouse protein, mH2A.1 (mouse), LINE1 (mouse), Minor Satellite (mouse), Telomeres (mouse), SINEB1 (mouse), Major Satellite (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a.4
Chromatin tracing in mESCs
Mouse ES cells
Target
2460 loci (mouse), 1200 loci from 20 regions at 25-kb resolution (mouse), 70 RNAs (mouse), Fibrillarin (mouse), H3K27ac (mouse), H3K9ac (mouse), H3K9me2 (mouse), H3K9me3 (mouse), H3S10p (mouse), H4K20me1 (mouse), H4K20me2 (mouse), mH2A.1 (mouse), RNA PolII S5p (mouse), Geminin (mouse), H3K27me2 (mouse), H3K27me3 (mouse), H4K16ac (mouse), H4K20me3 (mouse), Lmnb1 mouse protein, Sf3a2 mouse protein, LINE1 (mouse), Minor Satellite (mouse), Telomeres (mouse), SINEB1 (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site downstream of Sox2 SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 CTCF sites inserted downstream of both Sox2 and SE with Sox2 RNA FISH
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes, Sox2 mouse transcript, GFP transcript, mCherry transcript
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 CTCF sites inserted between Sox2 and SE with Sox2 RNA FISH
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes, Sox2 mouse transcript, GFP transcript, mCherry transcript
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 mutant CTCF sites inserted between Sox2 and SE
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site downstream of Sox2 SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 CTCF sites inserted downstream of both Sox2 and SE
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 CTCF sites inserted between Sox2 and SE
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes
multiplexed FISH
GM23248
Super-resolution imaging of chromosome walks
8 Mb walks on chr19
Target
Chromosome segment CS1 on chr19, Chromosome segment C