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  • ExperimentSetReplicate202
    • Project
    Lab
    Experiment Type
  • FISH
  • multiplexed FISH202
    • Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Publication
    Modifications
    Treatments
    Assay Details
    Center
    file_type
  • localizations1
    • Warnings
    4 Common Properties
     Experiment Category
    Microscopy
     Set Type
    Replicate
     Status
    Released
     Commendations
    No value
    202 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESYNKYXQN
    multiplexed FISH
    B-lymphocyte
    Multiplexed FISH in lymphoblastoid cell line
    homozygous mutant (indel in chr17)
    Target
    GRCh38:17:63486119-63686118 region
    Deplancke Lab
    4DNESFAJCG4W
    multiplexed FISH
    B-lymphocyte
    Multiplexed FISH in lymphoblastoid cell line
    homozygous reference
    Target
    GRCh38:17:63486119-63686118 region
    Deplancke Lab
    4DNESFUUB1RE
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in N2 x HI C.elegans (N2 maternal chromosomes)
    N2-strain specific oligos + Chromosome V imaging
    Target
    Chromosomes, N2 strain-specifc 21 regions interspersed along 21 TADs in Chr V in C.elegans (roundworm)
    Susan Mango
    4DNESUIXPQVU
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in N2 x HI C.elegans (HI paternal chromosomes)
    HI-strain specific oligos + Chromosome V imaging
    Target
    Chromosomes, HI strain-specifc 21 regions interspersed along 21 TADs in Chr V in C.elegans (roundworm)
    Susan Mango
    4DNESTY775PS
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in N2 C.elegans
    Whole-Chromosome V imaging
    Target
    100 kb in 21 TADS on Chr V in C.elegans (roundworm), Chromosomes
    Susan Mango
    4DNESJKJ16W6
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in HI x N2 C.elegans (N2 paternal chromosomes)
    N2-strain specific oligos + Chromosome V imaging
    Target
    Chromosomes, N2 strain-specifc 21 regions interspersed along 21 TADs in Chr V in C.elegans (roundworm)
    Susan Mango
    4DNESLQ1FBX1
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in HI x N2 C.elegans (HI maternal chromosomes)
    HI-strain specific oligos + Chromosome V imaging
    Target
    Chromosomes, HI strain-specifc 21 regions interspersed along 21 TADs in Chr V in C.elegans (roundworm)
    Susan Mango
    4DNESIGSG46I
    multiplexed FISH
    multicellular organism
    Multiplexed FISH in HI C.elegans
    Whole-Chromosome V imaging
    Target
    100 kb in 21 TADS on Chr V in C.elegans (roundworm), Chromosomes
    Susan Mango
    4DNES7OJTW3H
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    Rnf2 (dTag)
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESC49H1Q2
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    Rnf2 (dTAG13-Neg) - Negative control
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNES733YZ6E
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shRnf2 (vector shRnf2 I53S)
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESGUTNX66
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shRnf2 (vector shRnf2 WT)
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESUCSFR9H
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shRnf2-3
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESUAORW1V
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shRnf2-1
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESTI84OV9
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shNTC
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNES7V47RFL
    multiplexed FISH
    PDAC cells from mouse SA8068
    Multiplexed FISH in pancreatic tissue
    PDAC (GFP+)
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNES3UJAQMU
    multiplexed FISH
    PanIN cells from mouse
    Multiplexed FISH in pancreatic tissue
    PanIN-green (GFP+) Mutant
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNESPU4QLF3
    multiplexed FISH
    PanIN cells from mouse
    Multiplexed FISH in pancreatic tissue
    PanIN-yellow (GFP+tdTomato+)
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNES82VLU4S
    multiplexed FISH
    PanIN cells from mouse
    Multiplexed FISH in pancreatic tissue
    PanIN-red (tdTomato+) WT
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNESA7GOBZR
    multiplexed FISH
    Pancreatic duct cells from mouse SA6144
    Multiplexed FISH in pancreatic tissue
    WT CK19+ duct cells
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNESN7RP1VC
    multiplexed FISH
    LUAD from mouse MM2030 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    LUAD (GFP+)
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE
    4DNESL63T3CQ
    multiplexed FISH
    Adenoma from mouse SA3961 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    Adenoma-green (GFP+) Mutant
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE
    4DNESAH29OB7
    multiplexed FISH
    Adenoma from mouse SA3961 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    Adenoma-yellow (GFP+tdTomato+)
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE
    4DNES6ZB1RRK
    multiplexed FISH
    Adenoma from mouse SA3961 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    Adenoma-red (tdTomato+) WT
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE
    4DNES1MPPNUZ
    multiplexed FISH
    AT2 from mouse SA5258 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    WT AT2 cells
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE