Search for ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

Included Properties

Data Type
  • ExperimentSetReplicate143
    • Project
    Lab
    Experiment Type
  • FISH
  • multiplexed FISH143
    • Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Publication
    Modifications
    Treatments
    Assay Details
    Center
    file_type
  • localizations1
    • Warnings
    4 Common Properties
     Experiment Category
    Microscopy
     Set Type
    Replicate
     Status
    Released
     Commendations
    No value
    143 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESB7SZY5Q
    multiplexed FISH
    H1-hESC differentiated to neural progenitor cell
    Multiplexed FISH in neural crest cells on Chr22
    sgNon-Targeting Control (for shCHD7)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESHA7AS6L
    multiplexed FISH
    H1-hESC differentiated to neural progenitor cell
    Multiplexed FISH in neural crest cells on Chr22
    shCHD7 targeted knocked-down
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESIUBFH6Q
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr21
    sgNon-Targeting Control (for siCHD7)
    Target
    34 TADs in Chr21, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES94LRC75
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr21
    siCHD7 targeted knocked-down
    Target
    34 TADs in Chr21, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES6W6XBUJ
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr22
    sgNon-Targeting Control (for siCHD7)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESNGLW3S2
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr22
    siCHD7 targeted knocked-down
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES6SPZBS6
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    GFP over-expression, Control (for CHD7 OE)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES5UHPM9B
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    CHD7 over-expression
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESDOIAUSY
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgNon-Targeting Control (for siCHD7)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES1S6LQKZ
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    siCHD7 targeted knocked-down
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESNWDMERJ
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgNon-Targeting Control (for sgZNF114)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES6RGJOMK
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgZNF114 targeted knockdown
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESYSJOREU
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgNon-Targeting Control (for sgPCBP1)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESTEL2MX4
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgPCBP1 targeted knockdown
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES7J5VP92
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    137 genes knocked-down (using 404 sgRNAs and 8 sgNTC)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESJ15KEBD
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    Knock-out of Kat6b
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESQD7KQVS
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESTLJOO1C
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 treated with dtag
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESE2MH977
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 + 6hr recovery (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES2LZ7D8W
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESG53SEUU
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF in 24hr differentiation media (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESX8IACI3
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESKBC3QBS
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485 + 6hr recovery
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES9946GB9
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES3QUSY1F
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag in 24hr differentiation media
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD