Included Properties
Data Type
Project
Lab
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
Status
Commendations
Warnings
2 Common Properties
Experiment Category
Sequencing
Set Type
Replicate
378 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
extraembryonic cell
Hi-C on mouse stem cells
Extra embryonic stem cells (XEN)
Enzyme
Arima - A1, A2
in situ Hi-C
trophoblast cell
Hi-C on mouse stem cells
Trophoblast stem cells (TSC)
Enzyme
Arima - A1, A2
in situ Hi-C
SOX17-eGFP iCAS9 HUES8 differentiated to definitive endoderm
in situ Hi-C on hESCs differentiated toward pancreatic cells
definitive endoderm - HUES8
Enzyme
Arima - A1, A2
in situ Hi-C
SOX17-eGFP iCAS9 HUES8
in situ Hi-C on hESCs differentiated toward pancreatic cells
undifferentiated - HUES8
Enzyme
Arima - A1, A2
in situ Hi-C
SOX17-eGFP idCAS9-KRAB HUES8 differentiated to definitive endoderm
in situ Hi-C on hESCs differentiated toward pancreatic cells
definitive endoderm - HUES8
Enzyme
Arima - A1, A2
in situ Hi-C
SOX17-eGFP idCAS9-KRAB HUES8
in situ Hi-C on hESCs differentiated toward pancreatic cells
undifferentiated - HUES8
Enzyme
Arima - A1, A2
in situ Hi-C
PDX1-eGFP dCAS9-KRAB H1 differentiated to endoderm of foregut
in situ Hi-C on hESCs differentiated toward pancreatic cells
pancreatic precursor cells - H1
Enzyme
Arima - A1, A2
in situ Hi-C
PDX1-eGFP dCAS9-KRAB H1 differentiated to definitive endoderm
in situ Hi-C on hESCs differentiated toward pancreatic cells
definitive endoderm - H1
Enzyme
Arima - A1, A2
in situ Hi-C
PDX1-eGFP dCAS9-KRAB H1
in situ Hi-C on hESCs differentiated toward pancreatic cells
undifferentiated - H1
Enzyme
Arima - A1, A2
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 WT
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Crispr Ikzf2 enhancer deletion
Enzyme
MboI
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 WT
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Crispr Foxp3 deletion
Enzyme
MboI
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 WT
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Crispr control
Enzyme
MboI
in situ Hi-C
Treg - thymus - Fox3p-GFP+
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Foxp3 KIKO - control
Enzyme
MboI
in situ Hi-C
"wannabe" Treg - thymus - Foxp3-KO
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Foxp3 KIKO - Foxp3 knockout
Enzyme
MboI
in situ Hi-C
Treg - spleen - Foxp3+
in situ Hi-C on maturing regulatory T cells (Treg)
Mature Treg (spleen)
Enzyme
MboI
in situ Hi-C
Tcon - spleen Foxp3-
in situ Hi-C on maturing regulatory T cells (Treg)
TCon (conventional T-cells, spleen)
Enzyme
MboI
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 WT
in situ Hi-C on maturing regulatory T cells (Treg)
Treg DSM - WT control
Enzyme
MboI
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 DSM
in situ Hi-C on maturing regulatory T cells (Treg)
Treg DSM - Foxp3 domain swap
Enzyme
MboI
in situ Hi-C
double-positive, alpha-beta thymocyte
in situ Hi-C on maturing regulatory T cells (Treg)
CD4+ CD8+ double positive
Enzyme
MboI
in situ Hi-C
double-negative alpha beta thymocyte
in situ Hi-C on maturing regulatory T cells (Treg)
CD4- CD8- double negative
Enzyme
MboI
in situ Hi-C
CD8-positive, alpha-beta thymocyte
in situ Hi-C on maturing regulatory T cells (Treg)
CD8+ Single positive
Enzyme
MboI
in situ Hi-C
CD4-positive, alpha-beta thymocyte
in situ Hi-C on maturing regulatory T cells (Treg)
CD4+ Single positive
Enzyme
MboI
in situ Hi-C
Treg precursor - CD25+ Foxp3-
in situ Hi-C on maturing regulatory T cells (Treg)
CD25+ Treg precursor
Enzyme
MboI