Included Properties
Data Type
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
Status
Commendations
Warnings
4 Common Properties
Project
4DN
Lab
David Gilbert, SDBRI
Experiment Category
Sequencing
Set Type
Replicate
70 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
2-stage Repli-seq
7889SA3.5
E/L repliseq on engineered iPSC cells
Control 30kb deletion late fraction
Fraction
late fraction of 2 fractions
2-stage Repli-seq
7889SA3.5
E/L repliseq on engineered iPSC cells
Control 30kb deletion early fraction
Fraction
early fraction of 2 fractions
2-stage Repli-seq
7889SA3.5
E/L repliseq on engineered iPSC cells
IZ boundary deletion late fraction
Fraction
late fraction of 2 fractions
2-stage Repli-seq
7889SA3.5
E/L repliseq on engineered iPSC cells
IZ boundary deletion early fraction
Fraction
early fraction of 2 fractions
2-stage Repli-seq
7889SA3.5
E/L repliseq on engineered iPSC cells
unedited cells late fraction
Fraction
late fraction of 2 fractions
2-stage Repli-seq
7889SA3.5
E/L repliseq on engineered iPSC cells
unedited cells early fraction
Fraction
early fraction of 2 fractions
2-stage Repli-seq
ES-E14TG2a with CTCF-AID
E/L repliseq on EN52.9 mESC with CTCF-AID
control late fraction
Fraction
late of 2 fractions
2-stage Repli-seq
ES-E14TG2a with CTCF-AID
E/L repliseq on EN52.9 mESC with CTCF-AID
control early fraction
Fraction
early of 2 fractions; late of 2 fractions
2-stage Repli-seq
ES-E14TG2a with CTCF-AID
E/L repliseq on EN52.9 mESC with CTCF-AID
CTCF- depletion late fraction
Fraction
late of 2 fractions
2-stage Repli-seq
ES-E14TG2a with CTCF-AID
E/L repliseq on EN52.9 mESC with CTCF-AID
CTCF- depletion early fraction
Fraction
late of 2 fractions
2-stage Repli-seq
V6.5 with YY1-dTAG
E/L repliseq on V6.5 mESC with YY1-dTAG
control late fraction
Fraction
late of 2 fractions
2-stage Repli-seq
V6.5 with YY1-dTAG
E/L repliseq on V6.5 mESC with YY1-dTAG
control early fraction
Fraction
late of 2 fractions
2-stage Repli-seq
V6.5 with YY1-dTAG
E/L repliseq on V6.5 mESC with YY1-dTAG
YY1- depletion late fraction
Fraction
late of 2 fractions
2-stage Repli-seq
V6.5 with YY1-dTAG
E/L repliseq on V6.5 mESC with YY1-dTAG
YY1- depletion early fraction
Fraction
late of 2 fractions
2-stage Repli-seq
H1-hESC (Tier 1) differentiated to definitive endoderm
E/L repliseq on H1 derived definitive endoderm
late
Fraction
late fraction of 2 fractions
2-stage Repli-seq
H1-hESC (Tier 1) differentiated to definitive endoderm
E/L repliseq on H1 derived definitive endoderm
early
Fraction
early fraction of 2 fractions
2-stage Repli-seq
WTC-11 (Tier 1)
E/L repliseq on WTC-11
late
Fraction
late fraction of 2 fractions
2-stage Repli-seq
WTC-11 (Tier 1)
E/L repliseq on WTC-11
early
Fraction
early fraction of 2 fractions
2-stage Repli-seq
V6.5
E/L repliseq on V6.5 cells (2018-07-26)
late
Fraction
late fraction of 2 fractions
2-stage Repli-seq
V6.5
E/L repliseq on V6.5 cells (2018-07-26)
early
Fraction
early fraction of 2 fractions
2-stage Repli-seq
F121-9-CASTx129 (Tier 2)
E/L repliseq on F121-9 cells differentiated to NPCs (2018-07-26)
late
Fraction
late fraction of 2 fractions
2-stage Repli-seq
F121-9-CASTx129 (Tier 2)
E/L repliseq on F121-9 cells differentiated to NPCs (2018-07-26)
early
Fraction
early fraction of 2 fractions
2-stage Repli-seq
extraembryonic cell
E/L repliseq on extraembryonic endoderm (XEN) stem cells (2018-07-26)
late
Fraction
late fraction of 2 fractions
2-stage Repli-seq
extraembryonic cell
E/L repliseq on extraembryonic endoderm (XEN) stem cells (2018-07-26)
early
Fraction
early fraction of 2 fractions
2-stage Repli-seq
Cas129-CD1-129xCAST
E/L repliseq on Cas129 cells differentiated to NPCs (2018-07-26)
late
Fraction
late fraction of 2 fractions