ExperimentSetReplicate

ExperimentSet4DNESCONRBSM
released
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Early fraction S-phase Repliseq on CTCF knockdown EN52.9.1 mESCs - 2 replicates were grown and BrdU-labeled individually prior to FACS sorting

   November 15th, 2019 at 6:56pm
Source Publication
Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.
Sima J, Chakraborty A, et al., Cell 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
2-stage Repli-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Fraction: late of 2 fractions

4 Processed Files

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXH38RSQJ
Bio Rep 1, Tec Rep 1
2-stage Repli-seq on ES-E14TG2a with CTCF-AID S-phase late
File
Alignments (bam)
4DNFI6OBQAIK
8m
0.806%
Experiment
4DNEXJ57TKZK
Bio Rep 2, Tec Rep 1
2-stage Repli-seq on ES-E14TG2a with CTCF-AID S-phase late
File
Alignments (bam)
4DNFI2ZBVW65
6.27m
0.692%