Publications

Included Properties

Data Type
  • Publication14
    • Project
    Lab
    Journal
    Experiment Types
    Categories
  • basic biology14
    • Status
    14 Results
    Title
    Year
    Journal
    Exp Sets
    Project
    Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
    Popay TMPant AMunting FBlack MEHaghani NDixon J
    2024
    bioRxiv
    -
    4DN
    Extensive folding variability between homologous chromosomes in mammalian cells.
    Irastorza-Azcarate IKukalev AKempfer RThieme CJMastrobuoni GMarkowski JLoof GSparks TMBrookes ENatarajan KNSauer SFisher AGNicodemi MRen BSchwarz RFKempa SPombo A
    2024
    bioRxiv : the preprint server for biology
    1
    4DN
    Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function.
    Gholamalamdari Ovan Schaik TWang YKumar PZhang LZhang YGonzalez GAHVouzas AEZhao PAGilbert DMMa Jvan Steensel BBelmont AS
    2024
    bioRxiv : the preprint server for biology
    18
    4DN
    Mega-Enhancer Bodies Organize Neuronal Long Genes in the Cerebellum.
    Zhao ZParra OPMusella FScrutton-Alvarado NFujita SIAlber FYang YYamada T
    2023
    bioRxiv : the preprint server for biology
    12
    4DN
    Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types.
    Kumar PGholamalamdari OZhang YZhang LVertii Avan Schaik TPeric-Hupkes DSasaki TGilbert DMvan Steensel BMa JKaufman PDBelmont AS
    2023
    bioRxiv : the preprint server for biology
    32
    4DN
    Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
    Bianchi VGeeven GTucker NHilvering CREHall AWRoselli CHill MCMartin JFMargulies KBEllinor PTdeLaat W
    2019
    bioRxiv
    8
    External
    Dynamic chromatin organization and regulatory interactions in human endothelial cell differentiation.
    Alavattam KGMitzelfelt KABonora GFields PAYang XChiu HSPabon LBertero APalpant NJNoble WSMurry CE
    2022
    Stem cell reports
    8
    4DN
    Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites.
    Zou RSMarin-Gonzalez ALiu YLiu HBShen LDveirin RKLuo JXJKalhor RHa T
    2022
    Nature cell biology
    42
    4DN
    Cohesin-mediated loop anchors confine the locations of human replication origins.
    Emerson DJZhao PACook ALBarnett RJKlein KNSaulebekova DGe CZhou LSimandi ZMinsk MKTitus KRWang WGong WZhang DYang LVenev SVGibcus JHYang HSasaki TKanemaki MTYue FDekker JChen CLGilbert DMPhillips-Cremins JE
    2022
    Nature
    66
    4DN
    TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes.
    Zhang LZhang YChen YGholamalamdari OWang YMa JBelmont AS
    2020
    Genome research
    58
    4DN
    Allelic reprogramming of 3D chromatin architecture during early mammalian development.
    Du ZZheng HHuang BMa RWu JZhang XHe JXiang YWang QLi YMa JZhang XZhang KWang YZhang MQGao JDixon JRWang XZeng JXie W
    2017
    Nature
    18
    External
    Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.
    Sima JChakraborty ADileep VMichalski MKlein KNHolcomb NPTurner JLPaulsen MTRivera-Mulia JCTrevilla-Garcia CBartlett DAZhao PAWashburn BKNora EPKraft KMundlos SBruneau BGLjungman MFraser PAy FGilbert DM
    2019
    Cell
    9
    4DN
    Systematic proteomics of endogenous human cohesin reveals an interaction with diverse splicing factors and RNA-binding proteins required for mitotic progression.
    Kim JSHe XLiu JDuan ZKim TGerard JKim BPillai MMLane WSNoble WSBudnik BWaldman T
    2019
    The Journal of biological chemistry
    2
    External
    Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler.
    Chen YZhang YWang YZhang LBrinkman EKAdam SAGoldman Rvan Steensel BMa JBelmont AS
    2018
    The Journal of cell biology
    28
    4DN
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