Experiment Set

4DNESXRBILXJ
released
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16 fraction Repliseq and G1 fraction on H1-hESC Tier 1 cells

   March 21st, 2019 at 8:42pm
Source Publication
High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells.
Zhao PA, Sasaki T, et al., Genome biology 2020

Note: Replaced Item - 4DNESXRBILXJ  

This experiment set supercedes 4DNESL48CTGR because a new biological replicate was added.

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
H1-hESC (Tier 1)
Experiment Type(s) 
Multi-stage Repli-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Fraction: P5 of 16 fractions
  2. Fraction: P11 of 16 fractions
  3. Fraction: P14 of 16 fractions
  4. Fraction: P2 of 16 fractions
  5. Fraction: P16 of 16 fractions
  6. Fraction: P3 of 16 fractions
  7. Fraction: P9 of 16 fractions
  8. Fraction: G1 of 16 fractions
  9. Fraction: P4 of 16 fractions
  10. Fraction: P12 of 16 fractions
  11. Fraction: P15 of 16 fractions
  12. Fraction: P6 of 16 fractions
  13. Fraction: P10 of 16 fractions
  14. Fraction: P7 of 16 fractions
  15. Fraction: P13 of 16 fractions
  16. Fraction: P8 of 16 fractions
  17. Fraction: P17 of 16 fractions

68 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXXYBNRD1
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P5
File
4DNFIAIK8KMO
alignments (bam)
1.4 GB
File
4DNFIYH6REBI
normalized counts (bg)
3.76 MB
Experiment
4DNEXZPBA82F
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P11
File
4DNFIPOU7VFY
alignments (bam)
1.76 GB
File
4DNFIVIAWJRK
normalized counts (bg)
3.88 MB
Experiment
4DNEXXIXTTXI
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P14
File
4DNFI79HUNBK
alignments (bam)
965.27 MB
File
4DNFI3WGTLPN
normalized counts (bg)
3.65 MB
Experiment
4DNEXSK4XA98
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P2
File
4DNFISTVEOCY
alignments (bam)
957.91 MB
File
4DNFI25WQDGU
normalized counts (bg)
3.67 MB
Experiment
4DNEX28OSAGW
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P16
File
4DNFIU7OAWNV
alignments (bam)
967.14 MB
File
4DNFITMC3M4S
normalized counts (bg)
3.59 MB
Experiment
4DNEXKCP8338
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P3
File
4DNFITPBC44Z
alignments (bam)
1.06 GB
File
4DNFI66HSEY1
normalized counts (bg)
3.69 MB
Experiment
4DNEX7T7A9QP
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P9
File
4DNFI8MTWG8X
alignments (bam)
853.44 MB
File
4DNFIE36RMQE
normalized counts (bg)
3.63 MB
Show 27 More

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXXYBNRD1
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P5
File
Alignments (bam)
4DNFIAIK8KMO
28.37m
4.397%
Experiment
4DNEXZPBA82F
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P11
File
Alignments (bam)
4DNFIPOU7VFY
36.34m
4.617%
Experiment
4DNEXXIXTTXI
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P14
File
Alignments (bam)
4DNFI79HUNBK
19.23m
4.596%
Experiment
4DNEXSK4XA98
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P2
File
Alignments (bam)
4DNFISTVEOCY
19.58m
7.383%
Experiment
4DNEX28OSAGW
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P16
File
Alignments (bam)
4DNFIU7OAWNV
19.97m
8.657%
Experiment
4DNEXKCP8338
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P3
File
Alignments (bam)
4DNFITPBC44Z
21.4m
4.896%
Experiment
4DNEX7T7A9QP
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P9
File
Alignments (bam)
4DNFI8MTWG8X
15.49m
2.299%
Show 27 More