Experiment Set

4DNESL48CTGR
replaced
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16 fraction Repliseq and G1 fraction on H1-hESC Tier 1 cells

   February 1st, 2018 at 8:23pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
H1-hESC (Tier 1)
Experiment Type(s) 
Multi-stage Repli-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Fraction: G1 of 16 fractions
  2. Fraction: P2 of 16 fractions
  3. Fraction: P3 of 16 fractions
  4. Fraction: P4 of 16 fractions
  5. Fraction: P5 of 16 fractions
  6. Fraction: P6 of 16 fractions
  7. Fraction: P7 of 16 fractions
  8. Fraction: P8 of 16 fractions
  9. Fraction: P9 of 16 fractions
  10. Fraction: P10 of 16 fractions
  11. Fraction: P11 of 16 fractions
  12. Fraction: P12 of 16 fractions
  13. Fraction: P13 of 16 fractions
  14. Fraction: P14 of 16 fractions
  15. Fraction: P15 of 16 fractions
  16. Fraction: P16 of 16 fractions
  17. Fraction: P17 of 16 fractions

34 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXDRZLEQV
Multi-stage Repli-seq on H1-hESC (Tier 1) G1-phase G1
File
4DNFIICI1L91
alignments (bam)
1016.05 MB
File
4DNFI55KQMBA
normalized counts (bg)
3.55 MB
Experiment
4DNEXL6WTINA
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P2
File
4DNFISZGVUWC
alignments (bam)
994.54 MB
File
4DNFI2HVNXQF
normalized counts (bg)
3.7 MB
Experiment
4DNEXKCP8338
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P3
File
4DNFITPBC44Z
alignments (bam)
1.06 GB
File
4DNFI66HSEY1
normalized counts (bg)
3.69 MB
Experiment
4DNEX5M9XSGK
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P4
File
4DNFI37ID2F1
alignments (bam)
1.54 GB
File
4DNFI7GTUE3Q
normalized counts (bg)
3.82 MB
Experiment
4DNEXEQB7RNA
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P5
File
4DNFII8Q1YGF
alignments (bam)
1.4 GB
File
4DNFIZDXYD2L
normalized counts (bg)
3.79 MB
Experiment
4DNEXQ4EXW3K
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P6
File
4DNFIKDFHR5X
alignments (bam)
1.33 GB
File
4DNFIH66G4C7
normalized counts (bg)
3.79 MB
Experiment
4DNEXS77PTUK
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P7
File
4DNFIM2ZYTN6
alignments (bam)
1.4 GB
File
4DNFIY1ZLFI6
normalized counts (bg)
3.81 MB
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Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXDRZLEQV
Multi-stage Repli-seq on H1-hESC (Tier 1) G1-phase G1
File
Alignments (bam)
4DNFIICI1L91
19.38m
1.924%
Experiment
4DNEXL6WTINA
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P2
File
Alignments (bam)
4DNFISZGVUWC
21.04m
10.007%
Experiment
4DNEXKCP8338
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P3
File
Alignments (bam)
4DNFITPBC44Z
21.4m
4.896%
Experiment
4DNEX5M9XSGK
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P4
File
Alignments (bam)
4DNFI37ID2F1
31.91m
4.835%
Experiment
4DNEXEQB7RNA
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P5
File
Alignments (bam)
4DNFII8Q1YGF
28.56m
4.34%
Experiment
4DNEXQ4EXW3K
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P6
File
Alignments (bam)
4DNFIKDFHR5X
26.73m
3.549%
Experiment
4DNEXS77PTUK
Multi-stage Repli-seq on H1-hESC (Tier 1) S-phase P7
File
Alignments (bam)
4DNFIM2ZYTN6
28.33m
3.892%
Show 10 More