Experiment Set

4DNESE3WCUAQ
released
View JSON

Early and Late 2 phase Repliseq on 80 kb IZ deletion in iPSC cells

   November 1st, 2021 at 6:12pm
Source Publication
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, et al., Nature 2022

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
7889SA3.5
Experiment Type(s) 
2-stage Repli-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
  1. Fraction: early fraction of 2 fractions
  2. Fraction: late fraction of 2 fractions

16 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXKJPX9Y6
2-stage Repli-seq on 7889SA3.5 S-phase early fraction
File
4DNFICYC2AOG
alignments (bam)
550.94 MB
File
4DNFIPH78T6S
normalized counts (bg)
3.44 MB
File
4DNFIKGOWWW9
alignments (bam)
532.86 MB
File
4DNFIYOAOFR2
normalized counts (bg)
3.44 MB
File
4DNFINUZXJ1D
alignments (bam)
568.88 MB
File
4DNFINYY89QV
normalized counts (bg)
3.46 MB
File
4DNFIR2TMTOI
alignments (bam)
545.67 MB
File
4DNFIOHIKF66
normalized counts (bg)
3.44 MB
Experiment
4DNEX5ZRL6AF
2-stage Repli-seq on 7889SA3.5 S-phase late fraction
File
4DNFIQVGKN4G
alignments (bam)
518.95 MB
File
4DNFIFBIE2XK
normalized counts (bg)
3.42 MB
File
4DNFIY39QFPP
alignments (bam)
502.07 MB
File
4DNFISW7RCC8
normalized counts (bg)
3.42 MB
File
4DNFII6KG6JS
alignments (bam)
517.47 MB
File
4DNFICLLAZZU
normalized counts (bg)
3.41 MB
File
4DNFID2PUM5L
alignments (bam)
513.36 MB
File
4DNFIQDNJ6FY
normalized counts (bg)
3.42 MB

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXKJPX9Y6
2-stage Repli-seq on 7889SA3.5 S-phase early fraction
File
Alignments (bam)
4DNFICYC2AOG
9.79m
4.311%
File
Alignments (bam)
4DNFIKGOWWW9
9.49m
4.208%
File
Alignments (bam)
4DNFINUZXJ1D
9.85m
0.0%
File
Alignments (bam)
4DNFIR2TMTOI
9.73m
4.378%
Experiment
4DNEX5ZRL6AF
2-stage Repli-seq on 7889SA3.5 S-phase late fraction
File
Alignments (bam)
4DNFIQVGKN4G
9.1m
5.021%
File
Alignments (bam)
4DNFIY39QFPP
8.82m
4.889%
File
Alignments (bam)
4DNFII6KG6JS
9.09m
5.113%
File
Alignments (bam)
4DNFID2PUM5L
9.02m
5.064%