Experiment Set

4DNES66YWJU7
released
View JSON

Early and Late 2 phase Repliseq on 30 kb control deletion in iPSC cells

   November 1st, 2021 at 6:12pm
Source Publication
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, et al., Nature 2022

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
7889SA3.5
Experiment Type(s) 
2-stage Repli-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
  1. Fraction: early fraction of 2 fractions
  2. Fraction: late fraction of 2 fractions

16 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXJ2ISIYO
2-stage Repli-seq on 7889SA3.5 S-phase early fraction
File
4DNFIZTU9OT7
alignments (bam)
621.78 MB
File
4DNFIAGXN7YK
normalized counts (bg)
3.47 MB
File
4DNFICSH2EFM
alignments (bam)
601.2 MB
File
4DNFI5R37LU1
normalized counts (bg)
3.47 MB
File
4DNFI1DTB5H4
alignments (bam)
635.57 MB
File
4DNFICUDJA3E
normalized counts (bg)
3.48 MB
File
4DNFIA2K75CQ
alignments (bam)
616.57 MB
File
4DNFI7ZLS2ZI
normalized counts (bg)
3.47 MB
Experiment
4DNEXOLHMWYM
2-stage Repli-seq on 7889SA3.5 S-phase late fraction
File
4DNFIL8GFWSX
alignments (bam)
580.25 MB
File
4DNFIDH2UVIS
normalized counts (bg)
3.47 MB
File
4DNFIHPD1JYU
alignments (bam)
559.86 MB
File
4DNFI74QOSBD
normalized counts (bg)
3.46 MB
File
4DNFIP6DJ98P
alignments (bam)
578.52 MB
File
4DNFIQ11A6XP
normalized counts (bg)
3.47 MB
File
4DNFIDRUUIGP
alignments (bam)
573.41 MB
File
4DNFIN6VHR6H
normalized counts (bg)
3.47 MB

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXJ2ISIYO
2-stage Repli-seq on 7889SA3.5 S-phase early fraction
File
Alignments (bam)
4DNFIZTU9OT7
10.78m
2.955%
File
Alignments (bam)
4DNFICSH2EFM
10.45m
2.888%
File
Alignments (bam)
4DNFI1DTB5H4
10.83m
0.0%
File
Alignments (bam)
4DNFIA2K75CQ
10.73m
3.036%
Experiment
4DNEXOLHMWYM
2-stage Repli-seq on 7889SA3.5 S-phase late fraction
File
Alignments (bam)
4DNFIL8GFWSX
10.57m
8.689%
File
Alignments (bam)
4DNFIHPD1JYU
10.2m
8.432%
File
Alignments (bam)
4DNFIP6DJ98P
10.56m
8.776%
File
Alignments (bam)
4DNFIDRUUIGP
10.47m
8.684%