ExperimentSetReplicate

ExperimentSet4DNESZ25MOZV
released

Replicates of RNA Pol II in situ ChIA-PET on GM12878 cells.

   December 16th, 2019 at 10:50pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Note: Experiment items linked to 2 experiment sets (4DNESZ25MOZV, 4DNESLO7U5XD)  


This ExperimentSet contains files that are also part of 4DNESLO7U5XD.
The files 4DNFI5MV9Z7A, 4DNFIWUJKXCM, 4DNFIIFNCBM2, 4DNFIVCZCIMS (of experiment 4DNEXUNBCD3G) and files 4DNFIVR2ZQLN and 4DNFICD5DFCK (of experiment 4DNEXWDFTF5A) that were originally submitted as part of this dataset were added and analyzed as part of 4DNESLO7U5XD that contains additional replicate experiments to enable a more in depth analysis.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: RNA Pol II

8 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSMEPWHTU
Bio Replicate 1
Experiment
4DNEXUNBCD3G
Tech Replicate 1
Pair 1
16.79 GB
151
  Pass
253.2m
17.42 GB
151
  Pass
253.2m
Pair 2
12.01 GB
151
  Pass
132.17m
11.99 GB
151
  Pass
132.17m
Biosample
4DNBSISCVWBS
Bio Replicate 2
Experiment
4DNEXWDFTF5A
Tech Replicate 1
Pair 1
1.44 GB
151
  Pass
13.75m
1.53 GB
151
  Pass
13.75m
Pair 2
32.33 GB
151
  Pass
494.49m
32.74 GB
151
  Pass
494.49m