ExperimentSetReplicate

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ExperimentSet4DNESXS2U33O
released
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RNA FISH of Myc, Kit, and Calr intronic regions in G1E-ER4 cells differentiated for 13 hours

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:15:61985341-61990361 mouse region, GRCm38:5:75574987-75656722 mouse region, GRCm38:8:84842088-84846931 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:15:61985341-61990361 mouse region targeted by Alexa Fluor 594-labeled custom oligos
ch02
GRCm38:5:75574987-75656722 mouse region targeted by Cy5-labeled custom oligos
ch03
GRCm38:8:84842088-84846931 mouse region targeted by Cy3-labeled custom oligos

6 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXCRBJJS4
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIW4XNNHN
csv
16.79 kB
File
4DNFIKAIMV3U
coordinates (csv)
3.97 kB
File
4DNFI5H5W6JC
csv
9.25 kB
File
4DNFI2L8Q8EO
coordinates (csv)
962 Bytes
File
4DNFI18VVZSG
csv
12.44 kB
File
4DNFII7B6UKY
coordinates (csv)
2.05 kB