ExperimentSetReplicate

ExperimentSet4DNESTQRWC2G
released
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in situ Hi-C on immature cerebellar granule neurons Pax6 mid NeuN mid isolated using FANS from C57BL/6 mouse postnatal day 11

   March 27th, 2025 at 7:26pm
Source Publication
Reorganization of the heterochromatin-associated gene-dense subcompartment in early neuronal development.
Scrutton Alvarado NJ, Zhao Z, et al., Biology open 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
immature cerebellar granule neuron - PND11
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESTQRWC2G
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIIHLCAIE
350.76m
50.216%
19.879%
29.904%
Experiment
4DNEX2E2ZNDH
Bio Rep 1, Tec Rep 1
in situ Hi-C on immature cerebellar granule neuron - PND11 with MboI
File
Contact List-replicate (pairs)
4DNFI9KFFT17
204.98m
52.877%
22.269%
24.854%
Experiment
4DNEXWMOT3FQ
Bio Rep 2, Tec Rep 1
in situ Hi-C on immature cerebellar granule neuron - PND11 with MboI
File
Contact List-replicate (pairs)
4DNFI31Y3HC2
181.56m
46.621%
16.922%
36.457%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESTQRWC2G
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI79C9HVS
500000