ExperimentSetReplicate

ExperimentSet4DNESRYMCY6W
released
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Rna-seq on mature cerebellar granule neurons Pax6 mid-low NeuN high isolated using FANS from C57BL/6 mouse postnatal day 11

   March 27th, 2025 at 7:27pm
Source Publication
Reorganization of the heterochromatin-associated gene-dense subcompartment in early neuronal development.
Scrutton Alvarado NJ, Zhao Z, et al., Biology open 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
mature cerebellar granule neuron - PND11
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXGWUG18W
Bio Rep 1, Tec Rep 1
RNA-seq on mature cerebellar granule neuron - PND11
File
Read Positions (bam)
4DNFIJFTI3JM
37.32m
36.48m
Experiment
4DNEX1D56I2M
Bio Rep 2, Tec Rep 1
RNA-seq on mature cerebellar granule neuron - PND11
File
Read Positions (bam)
4DNFIGGKDJBE
38.18m
37.33m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXGWUG18W
Bio Rep 1, Tec Rep 1
RNA-seq on mature cerebellar granule neuron - PND11
File
Gene Expression (tsv)
4DNFIY27UR9B
11.43m
103.2k
Experiment
4DNEX1D56I2M
Bio Rep 2, Tec Rep 1
RNA-seq on mature cerebellar granule neuron - PND11
File
Gene Expression (tsv)
4DNFIR7X8G4O
11.73m
80.86k