ExperimentSetReplicate

ExperimentSet4DNESQPARDTJ
released
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in situ Hi-C on mitotic precursor cerebellar granule neurons Pax6 high Ki67 high isolated using FANS from C57BL/6 mouse postnatal day 6

   March 27th, 2025 at 7:26pm
Source Publication
Reorganization of the heterochromatin-associated gene-dense subcompartment in early neuronal development.
Scrutton Alvarado NJ, Zhao Z, et al., Biology open 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
mitotic cerebellar granule neuron precursor - PND6
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESQPARDTJ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIV2QERGF
151.09m
52.53%
21.524%
25.946%
Experiment
4DNEXJN5MQ23
Bio Rep 1, Tec Rep 1
in situ Hi-C on mitotic cerebellar granule neuron precursor - PND6 with MboI
File
Contact List-replicate (pairs)
4DNFIAR8P9OR
82.59m
49.852%
22.218%
27.93%
Experiment
4DNEX3FB19MM
Bio Rep 2, Tec Rep 1
in situ Hi-C on mitotic cerebellar granule neuron precursor - PND6 with MboI
File
Contact List-replicate (pairs)
4DNFI55L9MDH
83.94m
54.511%
20.774%
24.714%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESQPARDTJ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFILOG678F
None