ExperimentSet4DNESQN4JCAS
released
July 15th, 2021 at 4:13pm
Source Publication
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.
Nir G, Farabella I, et al., PLoS genetics 2018
Note on file format for particle localization from Vutara
Particle localizations for the OligoSTORM dataset from Nir et al. 2018 are in csv format, as produced by the Vutara SRX software from Bruker. A detailed description of all the columns is provided in this extract from the software manual.
Note on FOF-CT file format
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
primary cells
Sample
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Target: Chromosome segment CS1 on chr19, Chromosome segment CS2 on chr19, Chromosome segment CS3 on chr19, Chromosome segment CS4 on chr19, Chromosome segment CS5 on chr19, Chromosome segment CS6 on chr19, Chromosome segment CS7 on chr19, Chromosome segment CS8 on chr19, Chromosome segment CS9 on chr19, Sub-region 1 of CS7, Sub-region 2 of CS7, Sub-region 3 of CS7, Sub-region 4 of CS7, Loop anchor I, within CS6, Loop body, within CS6, Loop anchor II, within CS6, Loop flanking region (downstream), within CS6, Loop flanking region (upstream), within CS6, DNMT1 gene region, Differentially methylated region (DMR) of DNMT1 gene, CS_1C on chr19, CS0 on chr19
ChannelImaging RoundsPath
Channel
Imaging Rounds
Path
18 Processed Files
Experiment
File
File Type
File Size