ExperimentSetReplicate

ExperimentSet4DNESQN4JCAS
released

Super-resolution imaging of 8 Mb of chromosome 19 by OligoSTORM in human fibroblasts. Each file corresponds to a single cell (n=18 cells). Cells imaged during the same imaging session are grouped within one biological replicate.

   July 15th, 2021 at 4:13pm
Source Publication

Note on file format for particle localization from Vutara  


Particle localizations for the OligoSTORM dataset from Nir et al. 2018 are in csv format, as produced by the Vutara SRX software from Bruker. A detailed description of all the columns is provided in this extract from the software manual.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosome segment CS1 on chr19, Chromosome segment CS2 on chr19, Chromosome segment CS3 on chr19, Chromosome segment CS4 on chr19, Chromosome segment CS5 on chr19, Chromosome segment CS6 on chr19, Chromosome segment CS7 on chr19, Chromosome segment CS8 on chr19, Chromosome segment CS9 on chr19, Sub-region 1 of CS7, Sub-region 2 of CS7, Sub-region 3 of CS7, Sub-region 4 of CS7, Loop anchor I, within CS6, Loop body, within CS6, Loop anchor II, within CS6, Loop flanking region (downstream), within CS6, Loop flanking region (upstream), within CS6, DNMT1 gene region, Differentially methylated region (DMR) of DNMT1 gene, CS_1C on chr19, CS0 on chr19

18 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXP1ZWBGC
Bio Rep 1, Tec Rep 1
multiplexed FISH on GM23248
localizations (csv)
25.9 MB
localizations (csv)
12.36 MB
localizations (csv)
16.26 MB
Experiment
4DNEXAFPKJFF
Bio Rep 2, Tec Rep 1
multiplexed FISH on GM23248
localizations (csv)
31.25 MB
Experiment
4DNEXPSOC1ZK
Bio Rep 3, Tec Rep 1
multiplexed FISH on GM23248
localizations (csv)
5.07 MB
localizations (csv)
7.88 MB
Experiment
4DNEXPRBBX2L
Bio Rep 4, Tec Rep 1
multiplexed FISH on GM23248
localizations (csv)
14.26 MB
localizations (csv)
11.63 MB
localizations (csv)
14.41 MB
Experiment
4DNEX9EF563X
Bio Rep 5, Tec Rep 1
multiplexed FISH on GM23248
localizations (csv)
5.12 MB
localizations (csv)
3.66 MB
localizations (csv)
5 MB
localizations (csv)
3.29 MB
Experiment
4DNEX3K9EZJ4
Bio Rep 6, Tec Rep 1
multiplexed FISH on GM23248
localizations (csv)
4.27 MB
localizations (csv)
4.22 MB
localizations (csv)
3.08 MB
localizations (csv)
4.84 MB
localizations (csv)
4.82 MB