ExperimentSetReplicate

ExperimentSet4DNESPE924IP
released

Genome-wide chromatin imaging by DNA-MERFISH of 2000 loci in mouse primary motor cortex of Mecp2 heteozygous knock-out mice, together with RNA-MERFISH of 240 gene transcripts

   November 15th, 2023 at 8:41pm
Source Publication

Note on FOF-CT file format  


FOF-CT Core files replaced  


The original FOF-CT Core files (4DNFIY7ULW4E, 4DNFIDJJZFYF, 4DNFIM453D3J, 4DNFIN99DPHD) have been replaced with the current version to correct the 'XYZ_unit' header from 'nm' to 'micron'.

Microscope configuration  


The experiments associated with this study are derived from either d8f51a9c-1e1a-4a6c-9432-ddf7de64e836 or f0172a96-2bf5-4e6a-938d-f205c6e728c9 microscopes


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
tissue
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse), Mecp2 mouse protein

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXYXXV9AQ
Bio Rep 1, Tec Rep 1
multiplexed FISH on primary motor cortex
FOF-CT - DNA-spot/trace core (csv)
1.19 GB
FOF-CT - spot demultiplexing (csv)
5.66 GB
FOF-CT - cell data (csv)
12.67 MB
Experiment
4DNEXDSE1987
Bio Rep 2, Tec Rep 1
multiplexed FISH on primary motor cortex
FOF-CT - DNA-spot/trace core (csv)
1.99 GB
FOF-CT - spot demultiplexing (csv)
9.15 GB
FOF-CT - cell data (csv)
17.66 MB
Experiment
4DNEXRBK6HWZ
Bio Rep 3, Tec Rep 1
multiplexed FISH on primary motor cortex
FOF-CT - DNA-spot/trace core (csv)
1.31 GB
FOF-CT - spot demultiplexing (csv)
6.47 GB
FOF-CT - cell data (csv)
19.46 MB
Experiment
4DNEXH6CINOZ
Bio Rep 4, Tec Rep 1
multiplexed FISH on primary motor cortex
FOF-CT - DNA-spot/trace core (csv)
1.63 GB
FOF-CT - spot demultiplexing (csv)
6.42 GB
FOF-CT - cell data (csv)
17.05 MB