ExperimentSetReplicate

ExperimentSet4DNESNPHX8LY
released

CTCF ChIA-PET in GM12878

   January 19th, 2018 at 7:21pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: CTCF protein

12 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSP88YSJR
Bio Replicate 1
Experiment
4DNEX6B5D93H
Tech Replicate 1
Pair 1
788.95 MB
32-151
  Pass
9.81m
831.28 MB
32-151
  Pass
9.81m
Pair 2
12.12 GB
6-151
  Pass
130.06m
13.13 GB
4-151
  Pass
130.06m
Biosample
4DNBSDC3PFU6
Bio Replicate 2
Experiment
4DNEXKGUSP2D
Tech Replicate 1
Pair 1
2.08 GB
32-151
  Pass
21.53m
2.22 GB
32-151
  Pass
21.53m
Pair 2
16.35 GB
9-151
  Pass
159.81m
17.62 GB
0-151
  Pass
159.81m
Biosample
4DNBSMC9ZK71
Bio Replicate 3
Experiment
4DNEXM8U6XE3
Tech Replicate 1
Pair 1
1.93 GB
32-151
  Pass
21.51m
2.38 GB
32-151
  Pass
21.51m
Pair 2
34.06 GB
2-151
  Pass
338.8m
36.56 GB
2-151
  Pass
338.8m