ExperimentSetReplicate

ExperimentSet4DNESNHX1MVX
released

Rna-seq on immature cerebellar granule neurons Pax6 mid Ki67 low isolated using FANS from C57BL/6 mouse postnatal day 6

   March 27th, 2025 at 7:27pm
Source Publication

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEX7TKCBOO
Bio Rep 1, Tec Rep 1
RNA-seq on immature cerebellar granule neuron - PND6
File
Read Positions (bam)
4DNFIOJ59B7J
26.3m
25.71m
Experiment
4DNEXRKAV3UW
Bio Rep 2, Tec Rep 1
RNA-seq on immature cerebellar granule neuron - PND6
File
Read Positions (bam)
4DNFI7K7EIQU
31.17m
30.42m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEX7TKCBOO
Bio Rep 1, Tec Rep 1
RNA-seq on immature cerebellar granule neuron - PND6
File
Gene Expression (tsv)
4DNFINL42PDZ
9.16m
51.45k
Experiment
4DNEXRKAV3UW
Bio Rep 2, Tec Rep 1
RNA-seq on immature cerebellar granule neuron - PND6
File
Gene Expression (tsv)
4DNFI3ZX6EPU
12.09m
110.91k