ExperimentSetReplicate

ExperimentSet4DNESL5SGC7F
released
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Rna-seq on immature cerebellar granule neurons Pax6 mid NeuN mid isolated using FANS from C57BL/6 mouse postnatal day 11

   March 27th, 2025 at 7:27pm
Source Publication
Reorganization of the heterochromatin-associated gene-dense subcompartment in early neuronal development.
Scrutton Alvarado NJ, Zhao Z, et al., Biology open 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
immature cerebellar granule neuron - PND11
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXEJT9JNL
Bio Rep 1, Tec Rep 1
RNA-seq on immature cerebellar granule neuron - PND11
File
Read Positions (bam)
4DNFITOXY5VL
30.89m
30.22m
Experiment
4DNEXDCOOR2K
Bio Rep 2, Tec Rep 1
RNA-seq on immature cerebellar granule neuron - PND11
File
Read Positions (bam)
4DNFIT1JCAD7
33.67m
32.93m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXEJT9JNL
Bio Rep 1, Tec Rep 1
RNA-seq on immature cerebellar granule neuron - PND11
File
Gene Expression (tsv)
4DNFIFAPFARG
9.95m
87.03k
Experiment
4DNEXDCOOR2K
Bio Rep 2, Tec Rep 1
RNA-seq on immature cerebellar granule neuron - PND11
File
Gene Expression (tsv)
4DNFIH4NE916
11m
93.29k