ExperimentSetReplicate

ExperimentSet4DNESL3AW546
released

2 biological replicates of Hi-C on G1E-ER4 cells in early G1 phase

   March 3rd, 2020 at 8:07pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESL3AW546
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI17PCA92
449.26m
56.737%
34.312%
8.95%
Experiment
4DNEXLH4W6O1
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIB8E78ER
247.26m
52.353%
39.256%
8.391%
Experiment
4DNEXXGCEQWT
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFITKBCMEV
202m
62.103%
28.261%
9.635%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXLH4W6O1
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFI3NBFV8X
401.47m
11.562%
19.024%
3.011%
4.813%
0.086%
Experiment
4DNEXXGCEQWT
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFIFP4NWS8
322.07m
10.976%
19.031%
2.063%
5.212%
0.104%