ExperimentSetReplicate

ExperimentSet4DNESJQCDUN1
released
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in situ Hi-C on immature cerebellar granule neurons Pax6 mid Ki67 low isolated using FANS from C57BL/6 mouse postnatal day 6

   March 27th, 2025 at 7:26pm
Source Publication
Reorganization of the heterochromatin-associated gene-dense subcompartment in early neuronal development.
Scrutton Alvarado NJ, Zhao Z, et al., Biology open 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
immature cerebellar granule neuron - PND6
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESJQCDUN1
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIH1J7W1B
142.41m
49.78%
20.77%
29.45%
Experiment
4DNEXRVWQ2TY
Bio Rep 1, Tec Rep 1
in situ Hi-C on immature cerebellar granule neuron - PND6 with MboI
File
Contact List-replicate (pairs)
4DNFILA5TS6A
88.13m
48.476%
19.548%
31.976%
Experiment
4DNEXTUX13TE
Bio Rep 2, Tec Rep 1
in situ Hi-C on immature cerebellar granule neuron - PND6 with MboI
File
Contact List-replicate (pairs)
4DNFIG71LZ3E
69.64m
50.42%
22.229%
27.351%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESJQCDUN1
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIGGQLLHW
None