ExperimentSetReplicate

ExperimentSet4DNESHMCEWL6
released
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in situ Hi-C on mature cerebellar granule neurons Pax6 mid-low NeuN high isolated using FANS from C57BL/6 mouse postnatal day 11

   March 27th, 2025 at 7:26pm
Source Publication
Reorganization of the heterochromatin-associated gene-dense subcompartment in early neuronal development.
Scrutton Alvarado NJ, Zhao Z, et al., Biology open 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
mature cerebellar granule neuron - PND11
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESHMCEWL6
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIWOJSG4E
347.47m
52.067%
21.76%
26.172%
Experiment
4DNEX7V8CXTF
Bio Rep 1, Tec Rep 1
in situ Hi-C on mature cerebellar granule neuron - PND11 with MboI
File
Contact List-replicate (pairs)
4DNFI3G17VBC
204.67m
53.924%
24.581%
21.496%
Experiment
4DNEX4N6PMIP
Bio Rep 2, Tec Rep 1
in situ Hi-C on mature cerebellar granule neuron - PND11 with MboI
File
Contact List-replicate (pairs)
4DNFI79BH8JN
178.48m
49.259%
18.159%
32.582%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESHMCEWL6
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI3EWJW3N
None