ExperimentSetReplicate

ExperimentSet4DNESD28H8O7
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Chromatin tracing (ORCA) of a 3-Mb region at the chr6 locus in mESC untreated

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch03
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Alexa Fluor 750-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)
ch02
Geminin (mouse) targeted by anti-geminin (with anti-Rabbit, Alexa Fluor 647)
ch00
Chromosomes targeted by DAPI

4 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX6QFWMI2
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a
File
4DNFILYJ6RJ7
FOF-CT - DNA-spot/trace core (csv)
5.98 MB
File
4DNFIIKBWENA
FOF-CT - spot quality (csv)
1.65 MB
File
4DNFIELRN1VE
FOF-CT - trace data (csv)
34.65 kB
File
4DNFIZPY6EC1
FOF-CT - cell data (csv)
47.45 kB