ExperimentSetReplicate

ExperimentSet4DNESD28H8O7
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Chromatin tracing (ORCA) of a 3-Mb region at the chr6 locus in mESC untreated

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Microscope configuration  

The experiments associated with this study are derived from either 33ea326f-a557-4457-becf-55bc860c4bdf or 4fc82c6a-a9cd-43e1-aee8-36db3174b409 microscopes

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch03
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Alexa Fluor 750-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)
ch02
Geminin (mouse) targeted by anti-geminin (with anti-Rabbit, Alexa Fluor 647)
ch00
Chromosomes targeted by DAPI

4 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX6QFWMI2
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a
File
4DNFILYJ6RJ7
FOF-CT - DNA-spot/trace core (csv)
5.98 MB
File
4DNFIIKBWENA
FOF-CT - spot quality (csv)
1.65 MB
File
4DNFIELRN1VE
FOF-CT - trace data (csv)
34.65 kB
File
4DNFIZPY6EC1
FOF-CT - cell data (csv)
47.45 kB