ExperimentSetReplicate

ExperimentSet4DNESCSUHS2E
released
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Multiplexed FISH of 3 TADs (TAD-12 to TAD-14) spanning the central region of chromosome V in wild-type (Bristol N2 strain) C. elegans.

   April 8th, 2025 at 4:16pm
Source Publication
Lamina-Dependent Stretching and Unconventional Chromosome Compartments in Early C. elegans Embryos.
Sawh AN, Shafer MER, et al., Molecular cell 2020

Microscope configuration - Sawh AN et al. 2020  

The experiments associated with this study are derived from either e9aeab8a-8c8f-4e8d-b673-20c6c53dc447 or b904ca5d-fcac-4a7d-b703-dc98adedabf5 microscopes.

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
C. elegans
Sample Type 
whole organisms
Sample 
multicellular organism
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 3 TADs on ChrV (central region) (roundworm)
Channel
Imaging Rounds
Path
 
ch00
-
DAPI
ch01
-
fiducial beads
ch02
1-20
3 TADs on ChrV (central region) imaged using ATTO 561 imaging probes
ch03
1-20
3 TADs on ChrV (central region) imaged using Alexa Fluor 647 imaging probes

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXBODJ1L2
Bio Rep 1, Tec Rep 1
multiplexed FISH on multicellular organism
File
4DNFIOGFD1EU
FOF-CT - DNA-spot/trace core (csv)
1.31 MB