ExperimentSetReplicate

ExperimentSet4DNESAGNYV57
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Chromatin tracing (ORCA) of a 3-Mb region on chr6 + DMSO

   March 19th, 2023 at 4:27am
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Microscope configuration  

The experiments associated with this study are derived from either 33ea326f-a557-4457-becf-55bc860c4bdf or 4fc82c6a-a9cd-43e1-aee8-36db3174b409 microscopes

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
TC1
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: 3-Mb chr6 (mouse)
Channel
Path
 
ch03
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Alexa Fluor 750-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

3 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXHUELQ32
Bio Rep 1, Tec Rep 1
multiplexed FISH on TC1
File
4DNFIS5RP94Q
FOF-CT - DNA-spot/trace core (csv)
11.92 MB
File
4DNFIBXRQXH5
FOF-CT - spot quality (csv)
3.42 MB
File
4DNFIFPB59CR
FOF-CT - trace data (csv)
45.6 kB