ExperimentSetReplicate

ExperimentSet4DNESAGNYV57

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Chromatin tracing (ORCA) of a 3-Mb region on chr6 + DMSO

March 19th, 2023 at 4:27am

Source Publication

Loop stacking organizes genome folding from TADs to chromosomes.

Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format

Experiment Set Properties

Replicate

stem cells

multiplexed FISH

None

Chemical

Target: 3-Mb chr6 (mouse)

ch03

3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Alexa Fluor 750-labeled imaging oligos)

ch01

3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

3 Processed Files

Supplementary Files

Provenance

Attribution

Details

Warnings

3 Processed Files

Experiment

File

File Type

File Size

Experiment

4DNEXHUELQ32

Bio Rep 1, Tec Rep 1

multiplexed FISH on TC1

File

FOF-CT - DNA-spot/trace core (csv)

11.92 MB

File

FOF-CT - spot quality (csv)

3.42 MB

File

FOF-CT - trace data (csv)

45.6 kB