ExperimentSetReplicate

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ExperimentSet4DNES9L4AK6Q
released
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Hi-C on HFF-hTERT cells technical replicates.

   August 21st, 2017 at 8:58pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

14 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNES9L4AK6Q
Multiple Experiments
File
4DNFIQJLTRNZ
contact list-combined (pairs)
13.41 GB
-
File
4DNFIP1GNKUO
contact matrix (hic)
7.2 GB
-
File
4DNFIMDOXUT8
contact matrix (mcool)
8.04 GB
File
4DNFI4DZLQOD
boundaries (bed)
136.93 kB
-
File
4DNFIXAP7AST
insulation score-diamond (bw)
3.91 MB
-
File
4DNFIRDZNTHT
compartments (bw)
204.8 kB
-
Experiment
4DNEXA88T4X7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HFF-hTERT with HindIII
File
4DNFIU6BY3B8
alignments (bam)
13 GB
-
File
4DNFIZWEE353
contact list-replicate (pairs)
1.4 GB
-
Experiment
4DNEXHQU7ZRM
Bio Rep 1, Tec Rep 2
Dilution Hi-C on HFF-hTERT with HindIII
File
4DNFIMG1OUEQ
alignments (bam)
16.43 GB
-
File
4DNFI2KMRDTF
contact list-replicate (pairs)
1.73 GB
-
Experiment
4DNEXI15QCIB
Bio Rep 1, Tec Rep 4
Dilution Hi-C on HFF-hTERT with HindIII
File
4DNFIADEC6QY
alignments (bam)
70.82 GB
-
File
4DNFIN5BWCF2
contact list-replicate (pairs)
5.94 GB
-
Experiment
4DNEXTBPQFO5
Bio Rep 1, Tec Rep 3
Dilution Hi-C on HFF-hTERT with HindIII
File
4DNFIIKB63VD
alignments (bam)
66.38 GB
-
File
4DNFI5M796WN
contact list-replicate (pairs)
5.04 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES9L4AK6Q
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIQJLTRNZ
760.12m
36.851%
20.082%
43.066%
Experiment
4DNEXA88T4X7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFIZWEE353
77.08m
29.268%
28.419%
42.314%
Experiment
4DNEXHQU7ZRM
Bio Rep 1, Tec Rep 2
Dilution Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFI2KMRDTF
95.42m
31.871%
27.848%
40.281%
Experiment
4DNEXI15QCIB
Bio Rep 1, Tec Rep 4
Dilution Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFIN5BWCF2
316.66m
35.434%
17.076%
47.49%
Experiment
4DNEXTBPQFO5
Bio Rep 1, Tec Rep 3
Dilution Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFI5M796WN
270.96m
42.418%
18.49%
39.091%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES9L4AK6Q
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIMDOXUT8
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXA88T4X7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIU6BY3B8
122.61m
14.834%
15.06%
7.242%
0.001%
0.16%
Experiment
4DNEXHQU7ZRM
Bio Rep 1, Tec Rep 2
Dilution Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIMG1OUEQ
150.32m
14.067%
15.31%
7.146%
0.001%
0.162%
Experiment
4DNEXI15QCIB
Bio Rep 1, Tec Rep 4
Dilution Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIADEC6QY
597.78m
15.612%
15.401%
16.014%
0.001%
0.178%
Experiment
4DNEXTBPQFO5
Bio Rep 1, Tec Rep 3
Dilution Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFIIKB63VD
583.39m
15.517%
14.789%
23.247%
0.001%
0.08%