ExperimentSetReplicate

ExperimentSet4DNES4XLT839
released
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Late fraction S-phase Repliseq on crispr edited iPSCs with 80 kb IZ deletion - all cells were grown in a single culture and split into 2 batches prior to BrdU labeling and FACs sorting

   November 1st, 2021 at 6:12pm
Source Publication
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, et al., Nature 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
7889SA3.5
Experiment Type(s) 
2-stage Repli-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Fraction: late fraction of 2 fractions

8 Processed Files

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEX5ZRL6AF
Bio Rep 1, Tec Rep 1
2-stage Repli-seq on 7889SA3.5 S-phase late fraction
File
Alignments (bam)
4DNFIQVGKN4G
9.1m
5.021%
File
Alignments (bam)
4DNFIY39QFPP
8.82m
4.889%
File
Alignments (bam)
4DNFII6KG6JS
9.09m
5.113%
File
Alignments (bam)
4DNFID2PUM5L
9.02m
5.064%