ExperimentSetReplicate

ExperimentSet4DNES4TC13IL
released
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Chromatin tracing (ORCA) of the Pitx1 locus in mouse developing limb buds

   September 29th, 2022 at 7:33am
Source Publication
Boundary stacking interactions enable cross-TAD enhancer-promoter communication during limb development.
Hung TC, Kingsley DM, et al., Nature genetics 2024

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
limb bud
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: consecutive 10-kb regions at Pidx1 locus (mouse)
Channel
Imaging Rounds
Path
 
ch00
1-75
consecutive 10-kb regions at Pidx1 locus (mouse) targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)
ch01
1-75
consecutive 10-kb regions at Pidx1 locus (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

15 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXXACPQZA
Bio Rep 1, Tec Rep 1
multiplexed FISH on limb bud
File
4DNFI3M1AQSO
FOF-CT - DNA-spot/trace core (csv)
103.67 MB
File
4DNFIMCPRPLQ
FOF-CT - spot quality (csv)
170.25 MB
File
4DNFI5OFWAPL
FOF-CT - trace data (csv)
600.72 kB
Experiment
4DNEX7LOZX82
Bio Rep 2, Tec Rep 1
multiplexed FISH on limb bud
File
4DNFI2BK5CFZ
FOF-CT - DNA-spot/trace core (csv)
96.52 MB
File
4DNFIN2OVTU8
FOF-CT - spot quality (csv)
158.87 MB
File
4DNFI32RYF1I
FOF-CT - trace data (csv)
440.82 kB
Experiment
4DNEX5QBBHCE
Bio Rep 3, Tec Rep 1
multiplexed FISH on limb bud
File
4DNFI2HV38L6
FOF-CT - DNA-spot/trace core (csv)
96.49 MB
File
4DNFIPG92FMQ
FOF-CT - spot quality (csv)
158.66 MB
File
4DNFI4T8SMVD
FOF-CT - trace data (csv)
476.08 kB
Experiment
4DNEX57AQBME
Bio Rep 4, Tec Rep 1
multiplexed FISH on limb bud
File
4DNFIECI3KJQ
FOF-CT - DNA-spot/trace core (csv)
66.87 MB
File
4DNFISGXH7UB
FOF-CT - spot quality (csv)
109.49 MB
File
4DNFIRU8TWOF
FOF-CT - trace data (csv)
272.56 kB
Experiment
4DNEXYO4UN1U
Bio Rep 5, Tec Rep 1
multiplexed FISH on limb bud
File
4DNFIO5ZDQX5
FOF-CT - DNA-spot/trace core (csv)
98.24 MB
File
4DNFIW44Z89Y
FOF-CT - spot quality (csv)
158.17 MB
File
4DNFI89477ZH
FOF-CT - trace data (csv)
537.6 kB