ExperimentSetReplicate

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ExperimentSet4DNES3PDMUHG
released
View JSON

Replicates of 5C on iPS cells with 30 kb control Crispr deletion

   January 19th, 2021 at 8:49pm
Source Publication
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, et al., Nature 2022

Note - linked raw fastq files contain short enriched reads  

Care should be taken when using the FastQ files linked to this Experiment Set. The library was prepared from sequences enriched for a particular region of the genome using an 5C (Capture Hi-C) protocol. Alignment should be performed with an index generated from the oligonucleotides used for enrichment - available as a reference file linked the experiments in this set. Because the reads are short and contain adapter sequences alignment using a whole genome index will fail.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
7889SA3.5
Experiment Type(s) 
Capture Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: 6MB 5C enriched region

4 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Notes
Biosample
4DNBS9JK2HRX
Bio Replicate 1
Experiment
4DNEXOGZDPCO
Tech Replicate 1
Pair
File
4DNFI7LEV3H6
280.17 MB
35-37
  Pass
17.84m
File
4DNFI4Z37HSO
289.98 MB
35-37
  Pass
17.84m
Experiment
4DNEXJAH9PVW
Tech Replicate 2
Pair
File
4DNFIL5QDQFS
257.36 MB
35-37
  Pass
16.55m
File
4DNFIEL345SI
263.71 MB
35-37
  Pass
16.55m