ExperimentSet4DNES39F1QWU
released
January 19th, 2021 at 8:49pm
Source Publication
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, et al., Nature 2022
Note - linked raw fastq files contain short enriched reads
Care should be taken when using the FastQ files linked to this Experiment Set. The library was prepared from sequences enriched for a particular region of the genome using an 5C (Capture Hi-C) protocol. Alignment should be performed with an index generated from the oligonucleotides used for enrichment - available as a reference file linked the experiments in this set. Because the reads are short and contain adapter sequences alignment using a whole genome index will fail.
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
induced pluripotent stem cells
Sample
Experiment Type(s)
Modification Type
Crispr
Treatment Type
None
Assay Details
Target: 6MB 5C enriched region
2 Raw Files
Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Notes
Biosample
4DNBSGDOOBM2
Experiment
4DNEXJP6CXYD
Pair