ExperimentSetReplicate

ExperimentSet4DNES2M5JIGV
released

in situ Hi-C on H1-hESC (Tier 1) with DpnII

   December 11th, 2019 at 9:19pm
Source Publication
Ultrastructural details of mammalian chromosome architecture
Nils Krietenstein, Sameer Abraham, et al., bioRxiv 2019

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H1-hESC (Tier 1)
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

7 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNES2M5JIGV
Multiple Experiments
contact list-combined (pairs)
45.82 GB
contact matrix (hic)
20.64 GB
contact matrix (mcool)
24.5 GB
Experiment
4DNEXENKINA2
Bio Rep 1, Tec Rep 1
in situ Hi-C on H1-hESC (Tier 1) with DpnII
alignment (bam)
252.99 GB
contact list-replicate (pairs)
25.34 GB
Experiment
4DNEXZJZ5EBZ
Bio Rep 1, Tec Rep 2
in situ Hi-C on H1-hESC (Tier 1) with DpnII
alignment (bam)
253.42 GB
contact list-replicate (pairs)
23.29 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
From Multiple Experiments
4DNES2M5JIGV
Multiple Experiments
2.53 billion
30.312%
16.691%
52.997%
Experiment
4DNEXENKINA2
Bio Rep 1, Tec Rep 1
in situ Hi-C on H1-hESC (Tier 1) with DpnII
1.32 billion
30.587%
16.703%
52.71%
Experiment
4DNEXZJZ5EBZ
Bio Rep 1, Tec Rep 2
in situ Hi-C on H1-hESC (Tier 1) with DpnII
1.21 billion
30.012%
16.678%
53.31%