ExperimentSetReplicate

ExperimentSet4DNES2M5JIGV
released

in situ Hi-C on H1-hESC (Tier 1) with DpnII

   July 13th, 2017 at 2:23pm
Source Publication
Ultrastructural Details of Mammalian Chromosome Architecture.
Krietenstein N, Abraham S, et al., Molecular cell 2020

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H1-hESC (Tier 1)
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES2M5JIGV
Multiple Experiments
File
Contact List-combined (pairs)
4DNFITU7K8VQ
2.53 billion
30.312%
16.691%
52.997%
Experiment
4DNEXENKINA2
Bio Rep 1, Tec Rep 1
in situ Hi-C on H1-hESC (Tier 1) with DpnII
File
Contact List-replicate (pairs)
4DNFIINYRY8H
1.32 billion
30.587%
16.703%
52.71%
Experiment
4DNEXZJZ5EBZ
Bio Rep 1, Tec Rep 2
in situ Hi-C on H1-hESC (Tier 1) with DpnII
File
Contact List-replicate (pairs)
4DNFILR6CKEJ
1.21 billion
30.012%
16.678%
53.31%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXENKINA2
Bio Rep 1, Tec Rep 1
in situ Hi-C on H1-hESC (Tier 1) with DpnII
File
Alignments (bam)
4DNFIN6ZI1S4
3.17 billion
17.846%
22.328%
18.172%
0.007%
0.185%
Experiment
4DNEXZJZ5EBZ
Bio Rep 1, Tec Rep 2
in situ Hi-C on H1-hESC (Tier 1) with DpnII
File
Alignments (bam)
4DNFIQP64RT3
3.19 billion
18.173%
22.216%
21.79%
0.007%
0.172%