ExperimentSetReplicate

ExperimentSet4DNESXE4ZERT
replaced

Replicate Set of sciHi-C on GM12878 cells - this Replicate Set is derived from experiments performed on a pooled mixture of HFFc6 and GM12878 cells and raw files will contain reads from both cell types. Barcode information needs to be used to obtain line specific reads. Processed files for this set will be specific to GM12878 cells.

   February 5th, 2018 at 8:54pm
Source Publication

Assay Description  


Note: Replaced Item - 4DNESXE4ZERT  


This experiment set was replaced by 4DNESUE2NSGS because new biological replicates were added.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

12 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSHUSHDJ3
Bio Replicate 1
Experiment
4DNEXRQS6RMZ
Tech Replicate 1
Pair 1
29.06 GB
250
  Pass
139.37m
29.67 GB
250
  Pass
139.37m
Pair 2
5.67 GB
250
  Pass
29m
5.97 GB
250
  Pass
29m
Pair 3
27.13 GB
250
  Pass
130.05m
27.85 GB
250
  Pass
130.05m
Experiment
4DNEXC3U5F5M
Tech Replicate 2
Pair 1
4.95 GB
250
  Pass
24.43m
5.16 GB
250
  Pass
24.43m
Pair 2
8.68 GB
250
  Pass
47.09m
9.48 GB
250
  Pass
47.09m
Pair 3
27.19 GB
250
  Pass
134.67m
28.59 GB
250
  Pass
134.67m