ExperimentSetReplicate

ExperimentSet4DNESUE2NSGS
released

Replicate Set of sciHi-C on GM12878 cells - this Replicate Set is derived from experiments performed on pooled mixtures of either IMR-90 and GM12878 cells or HFFc6 and GM12878 cells. The raw files from Bioreplicate 1 experiments contain reads from HFFc6 and GM12878 cells while raw files from Bioreplicate 2 experiments contain reads from both IMR-90 and GM12878 . Barcode information provided in the reference files associated with the experiments needs to used to obtain line specific reads. Processed files for this set will be specific to GM12878 cells. NOTE: This description was updated 2020-06-22 - the earlier description inadvertently swapped the identity of the pooled cells for each bio replicate. This updated description now correctly describes the mix pools of cells that produced reads for each bio replicate.

   October 11th, 2018 at 11:04pm
Source Publication

Assay Description  


Note: Replaced Item - 4DNESUE2NSGS  


This experiment set supercedes 4DNESXE4ZERT because new biological replicates were added.

Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

16 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSHUSHDJ3
Bio Replicate 1
Experiment
4DNEXRQS6RMZ
Tech Replicate 1
Pair 1
29.06 GB
250
  Pass
139.37m
29.67 GB
250
  Pass
139.37m
Pair 2
5.67 GB
250
  Pass
29m
5.97 GB
250
  Pass
29m
Pair 3
27.13 GB
250
  Pass
130.05m
27.85 GB
250
  Pass
130.05m
Experiment
4DNEXC3U5F5M
Tech Replicate 2
Pair 1
4.95 GB
250
  Pass
24.43m
5.16 GB
250
  Pass
24.43m
Pair 2
8.68 GB
250
  Pass
47.09m
9.48 GB
250
  Pass
47.09m
Pair 3
27.19 GB
250
  Pass
134.67m
28.59 GB
250
  Pass
134.67m
Biosample
4DNBSHUSHDJ3
Bio Replicate 2
Experiment
4DNEXE63LNM5
Tech Replicate 1
Pair 1
10.71 GB
250
  Pass
57.16m
11.64 GB
250
  Pass
57.16m
Pair 2
11.61 GB
250
  Pass
62.51m
12.77 GB
250
  Pass
62.51m