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Properties

Sample Category
Treatments
Warnings
16 Common Properties
 Project
4DN
 Lab
Xavier Darzacq, BERKELEY
 Experiment Category
Sequencing
 Experiment Type
Micro-C
 Organism
Mouse
 Sample Type
stem cells
 Sample Tier
Tier 2
 Sample
JM8.N4 (Tier 2)
 Tissue Source
stem cell
 Publication
Hsieh TS et al. (2020) Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding.
 Modifications
No value
 Assay Details
Enzyme: MNase
 Center
NOFIC - Dekker
 Status
Released
 Commendations
No value
 Validation Errors
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Flavopiridol treatment to arrest Pol II release
Enzyme
MNase
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Triptolide treatment to inhibit transcription initiation
Enzyme
MNase
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Wild type, no treatment
Enzyme
MNase
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