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Properties

Organ/System
Treatments
Assay Details
17 Common Properties
 Project
4DN
 Lab
Job Dekker, UMMS
 Experiment Category
Sequencing
 Experiment Type
in situ Hi-C
 Organism
Human
 Sample Type
immortalized cells
 Sample Tier
Unclassified
 Sample Category
Other
 Sample
HeLa-S3
 Tissue Source
uterine cervix
 Publication
Betul Akgol Oksuz et al. (2020) doi:10.1101/2020.12.26.424448
 Modifications
No value
 Center
NOFIC - Dekker
 Status
Released
 Commendations
No value
 Warnings
Replicate Numbers
 Validation Errors
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde, HindIII, non synchronized
Enzyme
HindIII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde, DpnII, non synchronized
Enzyme
DpnII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+EGS, HindIII, non synchronized
Enzyme
HindIII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+EGS, DpnII, non synchronized
Enzyme
DpnII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+DSG, HindIII, non synchronized
Enzyme
HindIII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+DSG, DpnII, non synchronized
Enzyme
DpnII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde, HindIII, mitosis
Enzyme
HindIII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde, DpnII, mitosis
Enzyme
DpnII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+EGS, HindIII, mitosis
Enzyme
HindIII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+EGS, DpnII, mitosis
Enzyme
DpnII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+DSG, HindIII, mitosis
Enzyme
HindIII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+DSG, DpnII, mitosis
Enzyme
DpnII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde, HindIII, G1 phase
Enzyme
HindIII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde, DpnII, G1 phase
Enzyme
DpnII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+EGS, HindIII, G1 phase
Enzyme
HindIII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+EGS, DpnII, G1 phase
Enzyme
DpnII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+DSG, HindIII, G1 phase
Enzyme
HindIII
in situ Hi-C
HeLa-S3
Hi-C on HeLa cells - protocol variations
Formaldehyde+DSG, DpnII, G1 phase
Enzyme
DpnII
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