Included Properties
Data Type
Experiment Category
Experiment Type
Dataset
Sample Category
Sample
Publication
Modifications
Treatments
Assay Details
Center
Set Type
Warnings
9 Common Properties
Project
4DN
Lab
Xavier Darzacq, BERKELEY
Organism
Mouse
Sample Type
stem cells
Sample Tier
Tier 2
Organ/System
No value
Tissue Source
stem cell
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Flavopiridol treatment to arrest Pol II release
Enzyme
MNase
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Triptolide treatment to inhibit transcription initiation
Enzyme
MNase
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Wild type, no treatment
Enzyme
MNase
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
10 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
7 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
4 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
2 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
1 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
10 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
7 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
4 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
2 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
1 ms pulse on JM8N4 mESC Halo-Sox2 at 50Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
1 ms pulse on JM8N4 mESC Halo-Sox2 at 74Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
1 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
1 ms pulse on JM8N4 mESC Halo-Sox2 at 134Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
1 ms pulse on JM8N4 mESC Halo-Sox2 at 167Hz
Target
Sox2 mouse protein with HaloTag
SPT
JM8.N4 (Tier 2)
SPT on JM8N4 cells for Spot-On analysis
1 ms pulse on JM8N4 mESC Halo-Sox2 at 200Hz
Target
Sox2 mouse protein with HaloTag
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