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Included Properties

Data Type
  • ExperimentSetReplicate18
    • Experiment Category
    Experiment Type
    Dataset
    Sample Category
    Sample
  • JM8.N4 (Tier 2)18
    • Publication
    Modifications
    Treatments
    Assay Details
    Center
    Set Type
  • Replicate18
    • Warnings
    9 Common Properties
     Project
    4DN
     Lab
    Xavier Darzacq, BERKELEY
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Tier 2
     Organ/System
    No value
     Tissue Source
    stem cell
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES7X5GQUR
    Micro-C
    JM8.N4 (Tier 2)
    Micro-C on JM8.N4 Cells +/- transcription
    Flavopiridol treatment to arrest Pol II release
    Enzyme
    MNase
    Xavier Darzacq, BERKELEY
    4DNESSY8C22T
    Micro-C
    JM8.N4 (Tier 2)
    Micro-C on JM8.N4 Cells +/- transcription
    Triptolide treatment to inhibit transcription initiation
    Enzyme
    MNase
    Xavier Darzacq, BERKELEY
    4DNES14CNC1I
    Micro-C
    JM8.N4 (Tier 2)
    Micro-C on JM8.N4 Cells +/- transcription
    Wild type, no treatment
    Enzyme
    MNase
    Xavier Darzacq, BERKELEY
    4DNESWXN62Q1
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    10 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNES59H5198
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    7 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNESBX2BD63
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    4 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNESK238EPL
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    2 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNESNYXVWLM
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    1 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNES1Y6T43Z
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    10 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNESAT54KW4
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    7 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNESJJOMKFD
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    4 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNESYSZEQD2
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    2 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNESG6EHHXV
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    1 ms pulse on JM8N4 mESC Halo-Sox2 at 50Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNESLITMP9D
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    1 ms pulse on JM8N4 mESC Halo-Sox2 at 74Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNESWQDLGAS
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    1 ms pulse on JM8N4 mESC Halo-Sox2 at 100Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNES9FDQ6WA
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    1 ms pulse on JM8N4 mESC Halo-Sox2 at 134Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNES2EAGYES
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    1 ms pulse on JM8N4 mESC Halo-Sox2 at 167Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    4DNES16B1OTE
    SPT
    JM8.N4 (Tier 2)
    SPT on JM8N4 cells for Spot-On analysis
    1 ms pulse on JM8N4 mESC Halo-Sox2 at 200Hz
    Target
    Sox2 mouse protein with HaloTag
    Xavier Darzacq, BERKELEY
    - fin -