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Included Properties

Data Type
  • ExperimentSetReplicate79
    • Lab
    Experiment Type
    Dataset
    Sample
  • HCT116 (Tier 2)79
    • Organ/System
    Publication
    Treatments
    Assay Details
    Center
    Set Type
  • Replicate79
    • Commendations
    Warnings
    9 Common Properties
     Project
    4DN
     Experiment Category
    Sequencing
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Tier 2
     Sample Category
    Tier 2
     Tissue Source
    colon
     Modifications
    No value
     Status
    Released
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESNYUNZVF
    in situ Hi-C
    HCT116 (Tier 2)
    Hi-C in HCT116
    auxin 6h treatment
    Enzyme
    AluI
    Yijun Ruan, JAX
    4DNESOE1RAS4
    in situ Hi-C
    HCT116 (Tier 2)
    Hi-C in HCT116
    auxin no treatment
    Enzyme
    AluI
    Yijun Ruan, JAX
    4DNES9AFXLKY
    RNA-seq
    HCT116 (Tier 2)
    RNA-seq in HCT116
    auxin 12h treatment
    -
    Yijun Ruan, JAX
    4DNESDYKBYXZ
    RNA-seq
    HCT116 (Tier 2)
    RNA-seq in HCT116
    auxin 9h treatment
    -
    Yijun Ruan, JAX
    4DNES6MLCD63
    RNA-seq
    HCT116 (Tier 2)
    RNA-seq in HCT116
    auxin 6h treatment
    -
    Yijun Ruan, JAX
    4DNES5MRV8A5
    RNA-seq
    HCT116 (Tier 2)
    RNA-seq in HCT116
    auxin no treatment
    -
    Yijun Ruan, JAX
    4DNES67XOEEU
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    HCT116 - control
    Target
    None (Control)
    Yijun Ruan, JAX
    4DNESU1UBYVZ
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    RNAPII antibody - auxin 12h treatment
    Target
    RNA Pol II
    Yijun Ruan, JAX
    4DNESVG5D5XP
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    RNAPII antibody - auxin 9h treatment
    Target
    RNA Pol II
    Yijun Ruan, JAX
    4DNESWBOKGCP
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    RNAPII antibody - auxin 6h treatment
    Target
    RNA Pol II
    Yijun Ruan, JAX
    4DNESKLX2LUW
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    RNAPII antibody - auxin no treatment
    Target
    RNA Pol II
    Yijun Ruan, JAX
    4DNESRT55WUF
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    CTCF antibody - auxin 12h treatment
    Target
    CTCF protein
    Yijun Ruan, JAX
    4DNESIA23DQ4
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    CTCF antibody - auxin 9h treatment
    Target
    CTCF protein
    Yijun Ruan, JAX
    4DNESQOONUHI
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    CTCF antibody - auxin 6h treatment
    Target
    CTCF protein
    Yijun Ruan, JAX
    4DNES5X392R6
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    CTCF antibody - auxin no treatment
    Target
    CTCF protein
    Yijun Ruan, JAX
    4DNESPZC9M42
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    RAD21 antibody- auxin 12h treatment
    Target
    RAD21
    Yijun Ruan, JAX
    4DNESJEIVL6A
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    RAD21 antibody- auxin 9h treatment
    Target
    RAD21
    Yijun Ruan, JAX
    4DNESS1ZNUGZ
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    RAD21 antibody - auxin 6h treatment
    Target
    RAD21
    Yijun Ruan, JAX
    4DNESOF1U1HV
    ChIP-seq
    HCT116 (Tier 2)
    ChIP-seq in HCT116
    RAD21 antibody - auxin no treatment
    Target
    RAD21
    Yijun Ruan, JAX
    4DNESD24STE9
    in situ ChIA-PET
    HCT116 (Tier 2)
    in situ ChIA-PET in HCT116 cell line
    RAD21 antibody
    Target
    RAD21
    Yijun Ruan, JAX
    4DNES6PCOS5P
    in situ ChIA-PET
    HCT116 (Tier 2)
    in situ ChIA-PET in HCT116 cell line
    RNAPII antibody
    Target
    RNA Pol II
    Yijun Ruan, JAX
    4DNESQ56YUUQ
    in situ ChIA-PET
    HCT116 (Tier 2)
    in situ ChIA-PET in HCT116 cell line
    CTCF antibody
    Target
    CTCF protein
    Yijun Ruan, JAX
    4DNESN3FMZOA
    TSA-seq
    HCT116 (Tier 2)
    TSA-seq Nucleolin in HCT116 cells
    condition2 - conditionC - anti-Nucleolin
    Target
    NCL protein
    Andrew Belmont, ILLINOIS
    4DNES7A6HTEN
    TSA-seq
    HCT116 (Tier 2)
    TSA-seq Nucleolin in HCT116 cells
    input - condition2 - conditionC - anti-Nucleolin
    Target
    NCL protein
    Andrew Belmont, ILLINOIS
    4DNES9TFO1HF
    TSA-seq
    HCT116 (Tier 2)
    TSA-seq DDX18 in HCT116 cells
    condition2 - conditionC - anti-DDX18
    Target
    DDX18 protein
    Andrew Belmont, ILLINOIS