Included Properties
Data Type
Dataset
Sample Category
Treatments
Set Type
Warnings
16 Common Properties
Project
4DN
Lab
Xavier Darzacq, BERKELEY
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Mouse
Sample Type
stem cells
Sample Tier
Tier 2
Sample
JM8.N4 (Tier 2)
Organ/System
No value
Tissue Source
stem cell
Publication
Hsieh TS et al. (2020) PMID:32213323
Modifications
No value
Assay Details
Enzyme: MNase
Center
NOFIC - Dekker
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Flavopiridol treatment to arrest Pol II release
Enzyme
MNase
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Triptolide treatment to inhibit transcription initiation
Enzyme
MNase
Micro-C
JM8.N4 (Tier 2)
Micro-C on JM8.N4 Cells +/- transcription
Wild type, no treatment
Enzyme
MNase
- fin -